Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC3O43542 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC3O43542 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18■□□□□ 0.47
XRCC3O43542 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC3O43542 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC3O43542 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC18■□□□□ 0.47
XRCC3O43542 EXOG-217ENST00000630638 197 ntTSL 5 BASIC18■□□□□ 0.47
XRCC3O43542 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18■□□□□ 0.47
XRCC3O43542 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC3O43542 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18■□□□□ 0.47
XRCC3O43542 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC3O43542 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18■□□□□ 0.47
XRCC3O43542 AFG3L1P-217ENST00000557444 2447 ntBASIC18■□□□□ 0.47
XRCC3O43542 AL391422.3-201ENST00000603791 2761 ntBASIC18■□□□□ 0.47
XRCC3O43542 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18■□□□□ 0.47
XRCC3O43542 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18■□□□□ 0.47
XRCC3O43542 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
XRCC3O43542 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC3O43542 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
XRCC3O43542 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC3O43542 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
XRCC3O43542 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC3O43542 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC3O43542 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC3O43542 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC3O43542 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC3O43542 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC17.99■□□□□ 0.47
XRCC3O43542 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
XRCC3O43542 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC17.99■□□□□ 0.47
XRCC3O43542 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC3O43542 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC3O43542 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC3O43542 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC3O43542 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC3O43542 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
XRCC3O43542 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC3O43542 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC3O43542 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC3O43542 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
XRCC3O43542 AC010141.3-201ENST00000456659 717 ntBASIC17.98■□□□□ 0.47
XRCC3O43542 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC17.98■□□□□ 0.47
XRCC3O43542 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
XRCC3O43542 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.98■□□□□ 0.47
XRCC3O43542 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC3O43542 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
XRCC3O43542 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.98■□□□□ 0.47
XRCC3O43542 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC17.98■□□□□ 0.47
XRCC3O43542 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC3O43542 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.97■□□□□ 0.47
XRCC3O43542 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
XRCC3O43542 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC3O43542 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.97■□□□□ 0.47
XRCC3O43542 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC3O43542 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC3O43542 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
XRCC3O43542 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
XRCC3O43542 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC17.97■□□□□ 0.47
XRCC3O43542 pRNA.6-201ENST00000610482 90 ntBASIC17.97■□□□□ 0.47
XRCC3O43542 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
XRCC3O43542 pRNA.5-201ENST00000612139 90 ntBASIC17.97■□□□□ 0.47
XRCC3O43542 pRNA.11-201ENST00000618423 90 ntBASIC17.97■□□□□ 0.47
XRCC3O43542 pRNA.13-201ENST00000619112 90 ntBASIC17.97■□□□□ 0.47
XRCC3O43542 AL117332.1-201ENST00000622628 974 ntBASIC17.97■□□□□ 0.47
XRCC3O43542 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC3O43542 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
XRCC3O43542 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
XRCC3O43542 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
XRCC3O43542 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC3O43542 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC3O43542 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC3O43542 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC3O43542 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC3O43542 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC3O43542 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC3O43542 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC3O43542 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.97■□□□□ 0.47
XRCC3O43542 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
XRCC3O43542 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC17.97■□□□□ 0.47
XRCC3O43542 AC027702.1-201ENST00000563810 1770 ntBASIC17.96■□□□□ 0.47
XRCC3O43542 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
XRCC3O43542 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
XRCC3O43542 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
XRCC3O43542 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
XRCC3O43542 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
XRCC3O43542 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC17.96■□□□□ 0.47
XRCC3O43542 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC17.96■□□□□ 0.47
XRCC3O43542 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
XRCC3O43542 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
XRCC3O43542 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
XRCC3O43542 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
XRCC3O43542 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC17.96■□□□□ 0.47
XRCC3O43542 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
XRCC3O43542 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.96■□□□□ 0.47
XRCC3O43542 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
XRCC3O43542 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
XRCC3O43542 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.96■□□□□ 0.47
XRCC3O43542 PCDHAC2-203ENST00000615316 3011 ntBASIC17.96■□□□□ 0.46
XRCC3O43542 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
XRCC3O43542 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
XRCC3O43542 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms