Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
AP4E1Q9UPM8 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
AP4E1Q9UPM8 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
AP4E1Q9UPM8 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
AP4E1Q9UPM8 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
AP4E1Q9UPM8 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.89■■□□□ 1.09
AP4E1Q9UPM8 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.89■■□□□ 1.09
AP4E1Q9UPM8 AC053503.5-201ENST00000601508 636 ntBASIC21.89■■□□□ 1.09
AP4E1Q9UPM8 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
AP4E1Q9UPM8 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
AP4E1Q9UPM8 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
AP4E1Q9UPM8 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
AP4E1Q9UPM8 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 FEM1AP4-201ENST00000443167 1987 ntBASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 AC019069.1-201ENST00000610008 1333 ntBASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
AP4E1Q9UPM8 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
AP4E1Q9UPM8 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
AP4E1Q9UPM8 AL024507.2-201ENST00000606070 2574 ntBASIC21.87■■□□□ 1.09
AP4E1Q9UPM8 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.87■■□□□ 1.09
AP4E1Q9UPM8 KRT18P14-201ENST00000534205 1250 ntBASIC21.87■■□□□ 1.09
AP4E1Q9UPM8 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.87■■□□□ 1.09
AP4E1Q9UPM8 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
AP4E1Q9UPM8 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
AP4E1Q9UPM8 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
AP4E1Q9UPM8 AF106564.1-201ENST00000607058 2553 ntBASIC21.86■■□□□ 1.09
AP4E1Q9UPM8 PKD1P6-201ENST00000343738 4769 ntBASIC21.86■■□□□ 1.09
AP4E1Q9UPM8 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.86■■□□□ 1.09
AP4E1Q9UPM8 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.86■■□□□ 1.09
AP4E1Q9UPM8 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.86■■□□□ 1.09
AP4E1Q9UPM8 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.86■■□□□ 1.09
AP4E1Q9UPM8 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.86■■□□□ 1.09
AP4E1Q9UPM8 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
AP4E1Q9UPM8 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
AP4E1Q9UPM8 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
AP4E1Q9UPM8 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
AP4E1Q9UPM8 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.85■■□□□ 1.09
AP4E1Q9UPM8 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.85■■□□□ 1.09
AP4E1Q9UPM8 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.85■■□□□ 1.09
AP4E1Q9UPM8 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
AP4E1Q9UPM8 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
AP4E1Q9UPM8 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 AC005229.4-201ENST00000610085 2198 ntBASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.84■■□□□ 1.09
AP4E1Q9UPM8 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.83■■□□□ 1.09
AP4E1Q9UPM8 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
AP4E1Q9UPM8 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
AP4E1Q9UPM8 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
AP4E1Q9UPM8 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.83■■□□□ 1.09
AP4E1Q9UPM8 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
AP4E1Q9UPM8 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
AP4E1Q9UPM8 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
AP4E1Q9UPM8 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
AP4E1Q9UPM8 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.83■■□□□ 1.09
AP4E1Q9UPM8 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.83■■□□□ 1.09
AP4E1Q9UPM8 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.83■■□□□ 1.09
AP4E1Q9UPM8 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
AP4E1Q9UPM8 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
AP4E1Q9UPM8 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
AP4E1Q9UPM8 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.83■■□□□ 1.08
AP4E1Q9UPM8 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.82■■□□□ 1.08
AP4E1Q9UPM8 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms