Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TM9SF3Q9HD45 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TM9SF3Q9HD45 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TM9SF3Q9HD45 CYP2T1P-201ENST00000432607 1285 ntBASIC21.08■□□□□ 0.97
TM9SF3Q9HD45 AC068338.2-201ENST00000563278 1430 ntBASIC21.08■□□□□ 0.97
TM9SF3Q9HD45 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
TM9SF3Q9HD45 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.08■□□□□ 0.97
TM9SF3Q9HD45 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
TM9SF3Q9HD45 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TM9SF3Q9HD45 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.08■□□□□ 0.96
TM9SF3Q9HD45 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TM9SF3Q9HD45 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.08■□□□□ 0.96
TM9SF3Q9HD45 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.07■□□□□ 0.96
TM9SF3Q9HD45 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.07■□□□□ 0.96
TM9SF3Q9HD45 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TM9SF3Q9HD45 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TM9SF3Q9HD45 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.07■□□□□ 0.96
TM9SF3Q9HD45 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
TM9SF3Q9HD45 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TM9SF3Q9HD45 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.07■□□□□ 0.96
TM9SF3Q9HD45 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TM9SF3Q9HD45 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
TM9SF3Q9HD45 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TM9SF3Q9HD45 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.07■□□□□ 0.96
TM9SF3Q9HD45 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
TM9SF3Q9HD45 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TM9SF3Q9HD45 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 AC007322.4-201ENST00000509611 723 ntBASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TM9SF3Q9HD45 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 MIR4758-201ENST00000577688 71 ntBASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
TM9SF3Q9HD45 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 AC066615.1-201ENST00000640911 628 ntBASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
TM9SF3Q9HD45 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 MIPEPP3-201ENST00000412105 444 ntBASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 FAM201B-201ENST00000458407 597 ntBASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 AC137767.1-201ENST00000602918 1920 ntBASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 MKRN4P-201ENST00000444706 1521 ntBASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TM9SF3Q9HD45 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms