Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP1AQ9HD42 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP1AQ9HD42 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP1AQ9HD42 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP1AQ9HD42 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CHMP1AQ9HD42 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.05■□□□□ 0.48
CHMP1AQ9HD42 SRD5A1P1-201ENST00000442297 786 ntBASIC18.05■□□□□ 0.48
CHMP1AQ9HD42 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.05■□□□□ 0.48
CHMP1AQ9HD42 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
CHMP1AQ9HD42 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP1AQ9HD42 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP1AQ9HD42 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.05■□□□□ 0.48
CHMP1AQ9HD42 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP1AQ9HD42 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP1AQ9HD42 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 AC068587.7-201ENST00000641602 218 ntBASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
CHMP1AQ9HD42 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.03■□□□□ 0.48
CHMP1AQ9HD42 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP1AQ9HD42 GATM-206ENST00000558336 1522 ntTSL 2 BASIC18.03■□□□□ 0.48
CHMP1AQ9HD42 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP1AQ9HD42 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.03■□□□□ 0.48
CHMP1AQ9HD42 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP1AQ9HD42 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CHMP1AQ9HD42 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP1AQ9HD42 AC092171.4-201ENST00000609130 632 ntBASIC18.03■□□□□ 0.48
CHMP1AQ9HD42 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP1AQ9HD42 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP1AQ9HD42 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.03■□□□□ 0.48
CHMP1AQ9HD42 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC18.03■□□□□ 0.48
CHMP1AQ9HD42 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP1AQ9HD42 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CHMP1AQ9HD42 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 MIR3181-201ENST00000578512 73 ntBASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 AL035685.1-201ENST00000636663 812 ntBASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CHMP1AQ9HD42 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CHMP1AQ9HD42 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.02■□□□□ 0.47
CHMP1AQ9HD42 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.02■□□□□ 0.47
CHMP1AQ9HD42 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CHMP1AQ9HD42 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CHMP1AQ9HD42 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.02■□□□□ 0.47
CHMP1AQ9HD42 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CHMP1AQ9HD42 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CHMP1AQ9HD42 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP1AQ9HD42 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms