Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.85■□□□□ 0.61
SEC61A2Q9H9S3 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SEC61A2Q9H9S3 AL137060.1-201ENST00000618151 2648 ntBASIC18.85■□□□□ 0.61
SEC61A2Q9H9S3 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.85■□□□□ 0.61
SEC61A2Q9H9S3 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SEC61A2Q9H9S3 AC087623.3-201ENST00000607047 1098 ntBASIC18.85■□□□□ 0.61
SEC61A2Q9H9S3 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
SEC61A2Q9H9S3 AL358852.1-201ENST00000623174 1268 ntBASIC18.85■□□□□ 0.61
SEC61A2Q9H9S3 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.85■□□□□ 0.61
SEC61A2Q9H9S3 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SEC61A2Q9H9S3 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.85■□□□□ 0.61
SEC61A2Q9H9S3 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
SEC61A2Q9H9S3 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SEC61A2Q9H9S3 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SEC61A2Q9H9S3 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SEC61A2Q9H9S3 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.84■□□□□ 0.61
SEC61A2Q9H9S3 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.84■□□□□ 0.61
SEC61A2Q9H9S3 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.84■□□□□ 0.61
SEC61A2Q9H9S3 AL354811.1-201ENST00000610286 706 ntBASIC18.84■□□□□ 0.61
SEC61A2Q9H9S3 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SEC61A2Q9H9S3 AC026310.3-201ENST00000625186 2373 ntBASIC18.84■□□□□ 0.61
SEC61A2Q9H9S3 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.84■□□□□ 0.61
SEC61A2Q9H9S3 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SEC61A2Q9H9S3 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SEC61A2Q9H9S3 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
SEC61A2Q9H9S3 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
SEC61A2Q9H9S3 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.83■□□□□ 0.61
SEC61A2Q9H9S3 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
SEC61A2Q9H9S3 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
SEC61A2Q9H9S3 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SEC61A2Q9H9S3 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.83■□□□□ 0.6
SEC61A2Q9H9S3 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SEC61A2Q9H9S3 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SEC61A2Q9H9S3 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
SEC61A2Q9H9S3 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.83■□□□□ 0.6
SEC61A2Q9H9S3 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.83■□□□□ 0.6
SEC61A2Q9H9S3 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
SEC61A2Q9H9S3 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18.83■□□□□ 0.6
SEC61A2Q9H9S3 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
SEC61A2Q9H9S3 AP006587.3-201ENST00000525742 1516 ntBASIC18.83■□□□□ 0.6
SEC61A2Q9H9S3 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SEC61A2Q9H9S3 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SEC61A2Q9H9S3 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 AC027612.3-201ENST00000413684 1047 ntBASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 AC003102.1-202ENST00000563394 1796 ntBASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 Z98882.1-201ENST00000622160 2253 ntBASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SEC61A2Q9H9S3 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 AC097381.1-201ENST00000429019 1296 ntBASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 MIR6821-201ENST00000617625 74 ntBASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.81■□□□□ 0.6
SEC61A2Q9H9S3 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SEC61A2Q9H9S3 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms