Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VMP1Q96GC9 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
VMP1Q96GC9 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.08■□□□□ 0.81
VMP1Q96GC9 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.08■□□□□ 0.81
VMP1Q96GC9 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VMP1Q96GC9 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.81
VMP1Q96GC9 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.08■□□□□ 0.81
VMP1Q96GC9 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.08■□□□□ 0.81
VMP1Q96GC9 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
VMP1Q96GC9 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.08■□□□□ 0.81
VMP1Q96GC9 CCDC92B-201ENST00000575506 885 ntBASIC20.08■□□□□ 0.81
VMP1Q96GC9 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.08■□□□□ 0.81
VMP1Q96GC9 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VMP1Q96GC9 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
VMP1Q96GC9 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VMP1Q96GC9 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
VMP1Q96GC9 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
VMP1Q96GC9 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.08■□□□□ 0.8
VMP1Q96GC9 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.08■□□□□ 0.8
VMP1Q96GC9 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VMP1Q96GC9 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VMP1Q96GC9 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VMP1Q96GC9 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VMP1Q96GC9 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.07■□□□□ 0.8
VMP1Q96GC9 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VMP1Q96GC9 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VMP1Q96GC9 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
VMP1Q96GC9 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VMP1Q96GC9 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VMP1Q96GC9 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
VMP1Q96GC9 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VMP1Q96GC9 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.07■□□□□ 0.8
VMP1Q96GC9 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.07■□□□□ 0.8
VMP1Q96GC9 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
VMP1Q96GC9 TERF1P2-201ENST00000583350 1212 ntBASIC20.07■□□□□ 0.8
VMP1Q96GC9 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VMP1Q96GC9 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
VMP1Q96GC9 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.07■□□□□ 0.8
VMP1Q96GC9 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VMP1Q96GC9 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
VMP1Q96GC9 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VMP1Q96GC9 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.06■□□□□ 0.8
VMP1Q96GC9 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.06■□□□□ 0.8
VMP1Q96GC9 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VMP1Q96GC9 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VMP1Q96GC9 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VMP1Q96GC9 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VMP1Q96GC9 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.06■□□□□ 0.8
VMP1Q96GC9 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.06■□□□□ 0.8
VMP1Q96GC9 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.06■□□□□ 0.8
VMP1Q96GC9 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VMP1Q96GC9 KRT18P14-201ENST00000534205 1250 ntBASIC20.06■□□□□ 0.8
VMP1Q96GC9 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.06■□□□□ 0.8
VMP1Q96GC9 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VMP1Q96GC9 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VMP1Q96GC9 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VMP1Q96GC9 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VMP1Q96GC9 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.06■□□□□ 0.8
VMP1Q96GC9 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VMP1Q96GC9 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VMP1Q96GC9 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
VMP1Q96GC9 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VMP1Q96GC9 AC009237.3-201ENST00000393279 1427 ntBASIC20.05■□□□□ 0.8
VMP1Q96GC9 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VMP1Q96GC9 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
VMP1Q96GC9 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VMP1Q96GC9 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VMP1Q96GC9 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VMP1Q96GC9 DUX4L2-201ENST00000561772 1275 ntBASIC20.05■□□□□ 0.8
VMP1Q96GC9 AL034346.1-201ENST00000568244 1277 ntBASIC20.05■□□□□ 0.8
VMP1Q96GC9 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.05■□□□□ 0.8
VMP1Q96GC9 DUX4L6-201ENST00000626483 1275 ntBASIC20.05■□□□□ 0.8
VMP1Q96GC9 DUX4L1-201ENST00000627662 1275 ntBASIC20.05■□□□□ 0.8
VMP1Q96GC9 DUX4L8-201ENST00000629013 1275 ntBASIC20.05■□□□□ 0.8
VMP1Q96GC9 DUX4L3-201ENST00000630187 1275 ntBASIC20.05■□□□□ 0.8
VMP1Q96GC9 DUX4L7-201ENST00000630678 1275 ntBASIC20.05■□□□□ 0.8
VMP1Q96GC9 DUX4L5-201ENST00000630834 1275 ntBASIC20.05■□□□□ 0.8
VMP1Q96GC9 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VMP1Q96GC9 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VMP1Q96GC9 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VMP1Q96GC9 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VMP1Q96GC9 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
VMP1Q96GC9 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VMP1Q96GC9 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VMP1Q96GC9 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.04■□□□□ 0.8
VMP1Q96GC9 AL162430.1-201ENST00000480705 870 ntBASIC20.04■□□□□ 0.8
VMP1Q96GC9 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VMP1Q96GC9 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VMP1Q96GC9 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VMP1Q96GC9 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.04■□□□□ 0.8
VMP1Q96GC9 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.04■□□□□ 0.8
VMP1Q96GC9 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
VMP1Q96GC9 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VMP1Q96GC9 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
VMP1Q96GC9 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VMP1Q96GC9 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
VMP1Q96GC9 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VMP1Q96GC9 RNF165-205ENST00000588679 2904 ntBASIC20.03■□□□□ 0.8
VMP1Q96GC9 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VMP1Q96GC9 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms