Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.17■□□□□ 0.98
ECHDC3Q96DC8 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ECHDC3Q96DC8 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
ECHDC3Q96DC8 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
ECHDC3Q96DC8 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ECHDC3Q96DC8 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ECHDC3Q96DC8 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ECHDC3Q96DC8 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 AC011767.1-201ENST00000617410 1153 ntBASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ECHDC3Q96DC8 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ECHDC3Q96DC8 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
ECHDC3Q96DC8 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ECHDC3Q96DC8 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.15■□□□□ 0.98
ECHDC3Q96DC8 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ECHDC3Q96DC8 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ECHDC3Q96DC8 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ECHDC3Q96DC8 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ECHDC3Q96DC8 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.15■□□□□ 0.98
ECHDC3Q96DC8 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.15■□□□□ 0.98
ECHDC3Q96DC8 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ECHDC3Q96DC8 AC080038.1-201ENST00000611274 1154 ntBASIC21.15■□□□□ 0.98
ECHDC3Q96DC8 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ECHDC3Q96DC8 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.15■□□□□ 0.98
ECHDC3Q96DC8 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.15■□□□□ 0.98
ECHDC3Q96DC8 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.14■□□□□ 0.98
ECHDC3Q96DC8 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 RAP2CP1-201ENST00000605103 478 ntBASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 AC120498.10-201ENST00000621827 505 ntBASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 RARRES2P11-201ENST00000635158 484 ntBASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ECHDC3Q96DC8 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 AC073111.5-205ENST00000641717 521 ntBASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 AC079834.2-201ENST00000609776 1949 ntBASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 AC244015.2-201ENST00000616358 1861 ntBASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.13■□□□□ 0.97
ECHDC3Q96DC8 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
ECHDC3Q96DC8 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ECHDC3Q96DC8 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
ECHDC3Q96DC8 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
ECHDC3Q96DC8 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
ECHDC3Q96DC8 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
ECHDC3Q96DC8 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
ECHDC3Q96DC8 CDCA4P2-201ENST00000441182 718 ntBASIC21.12■□□□□ 0.97
ECHDC3Q96DC8 DUX4L16-201ENST00000555130 1264 ntBASIC21.12■□□□□ 0.97
ECHDC3Q96DC8 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.12■□□□□ 0.97
ECHDC3Q96DC8 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
ECHDC3Q96DC8 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ECHDC3Q96DC8 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
ECHDC3Q96DC8 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ECHDC3Q96DC8 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ECHDC3Q96DC8 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms