Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 DET1-205ENST00000558413 583 ntTSL 4 BASIC28.43■■■□□ 2.14
USP54Q70EL1 LTK-203ENST00000453182 2412 ntTSL 2 BASIC28.43■■■□□ 2.14
USP54Q70EL1 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC28.43■■■□□ 2.14
USP54Q70EL1 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC28.43■■■□□ 2.14
USP54Q70EL1 PKM-204ENST00000449901 2526 ntTSL 2 BASIC28.42■■■□□ 2.14
USP54Q70EL1 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC28.42■■■□□ 2.14
USP54Q70EL1 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC28.42■■■□□ 2.14
USP54Q70EL1 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC28.42■■■□□ 2.14
USP54Q70EL1 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC28.42■■■□□ 2.14
USP54Q70EL1 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC28.42■■■□□ 2.14
USP54Q70EL1 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
USP54Q70EL1 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC28.42■■■□□ 2.14
USP54Q70EL1 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
USP54Q70EL1 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC28.42■■■□□ 2.14
USP54Q70EL1 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
USP54Q70EL1 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC28.42■■■□□ 2.14
USP54Q70EL1 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC28.42■■■□□ 2.14
USP54Q70EL1 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
USP54Q70EL1 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC28.41■■■□□ 2.14
USP54Q70EL1 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
USP54Q70EL1 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
USP54Q70EL1 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
USP54Q70EL1 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
USP54Q70EL1 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
USP54Q70EL1 SERPINH1P1-201ENST00000419794 1249 ntBASIC28.41■■■□□ 2.14
USP54Q70EL1 GCSHP5-201ENST00000443090 522 ntBASIC28.41■■■□□ 2.14
USP54Q70EL1 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC28.41■■■□□ 2.14
USP54Q70EL1 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC28.41■■■□□ 2.14
USP54Q70EL1 AC026471.6-201ENST00000622954 1905 ntBASIC28.4■■■□□ 2.14
USP54Q70EL1 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC28.4■■■□□ 2.14
USP54Q70EL1 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC28.4■■■□□ 2.14
USP54Q70EL1 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC28.4■■■□□ 2.14
USP54Q70EL1 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
USP54Q70EL1 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC28.4■■■□□ 2.14
USP54Q70EL1 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC28.4■■■□□ 2.14
USP54Q70EL1 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC28.4■■■□□ 2.14
USP54Q70EL1 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC28.4■■■□□ 2.14
USP54Q70EL1 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
USP54Q70EL1 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
USP54Q70EL1 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
USP54Q70EL1 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC28.39■■■□□ 2.14
USP54Q70EL1 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.14
USP54Q70EL1 AC097658.1-201ENST00000475555 843 ntBASIC28.39■■■□□ 2.14
USP54Q70EL1 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC28.39■■■□□ 2.14
USP54Q70EL1 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC28.39■■■□□ 2.14
USP54Q70EL1 FAM99A-202ENST00000538190 1989 ntBASIC28.39■■■□□ 2.14
USP54Q70EL1 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
USP54Q70EL1 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC28.38■■■□□ 2.13
USP54Q70EL1 CYP2T3P-201ENST00000601990 817 ntBASIC28.38■■■□□ 2.13
USP54Q70EL1 AC100791.3-201ENST00000617619 330 ntBASIC28.38■■■□□ 2.13
USP54Q70EL1 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
USP54Q70EL1 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC28.38■■■□□ 2.13
USP54Q70EL1 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
USP54Q70EL1 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
USP54Q70EL1 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
USP54Q70EL1 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
USP54Q70EL1 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC28.38■■■□□ 2.13
USP54Q70EL1 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
USP54Q70EL1 AC080038.3-201ENST00000623346 1952 ntBASIC28.37■■■□□ 2.13
USP54Q70EL1 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
USP54Q70EL1 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC28.37■■■□□ 2.13
USP54Q70EL1 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC28.37■■■□□ 2.13
USP54Q70EL1 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC28.37■■■□□ 2.13
USP54Q70EL1 CASP6-205ENST00000505486 538 ntTSL 4 BASIC28.37■■■□□ 2.13
USP54Q70EL1 AC060766.5-201ENST00000590539 871 ntBASIC28.37■■■□□ 2.13
USP54Q70EL1 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
USP54Q70EL1 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC28.37■■■□□ 2.13
USP54Q70EL1 AC092053.2-201ENST00000640557 1818 ntBASIC28.37■■■□□ 2.13
USP54Q70EL1 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC28.36■■■□□ 2.13
USP54Q70EL1 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC28.36■■■□□ 2.13
USP54Q70EL1 AC068473.5-201ENST00000616428 2072 ntBASIC28.36■■■□□ 2.13
USP54Q70EL1 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
USP54Q70EL1 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC28.36■■■□□ 2.13
USP54Q70EL1 AP003097.1-201ENST00000530657 1135 ntBASIC28.36■■■□□ 2.13
USP54Q70EL1 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC28.36■■■□□ 2.13
USP54Q70EL1 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC28.36■■■□□ 2.13
USP54Q70EL1 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC28.36■■■□□ 2.13
USP54Q70EL1 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
USP54Q70EL1 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC28.36■■■□□ 2.13
USP54Q70EL1 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC28.36■■■□□ 2.13
USP54Q70EL1 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC28.35■■■□□ 2.13
USP54Q70EL1 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
USP54Q70EL1 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
USP54Q70EL1 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
USP54Q70EL1 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC28.35■■■□□ 2.13
USP54Q70EL1 C11orf96-202ENST00000528572 1834 ntBASIC28.35■■■□□ 2.13
USP54Q70EL1 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
USP54Q70EL1 AC245052.3-201ENST00000450182 901 ntBASIC28.35■■■□□ 2.13
USP54Q70EL1 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC28.35■■■□□ 2.13
USP54Q70EL1 AC008403.3-201ENST00000598924 454 ntBASIC28.35■■■□□ 2.13
USP54Q70EL1 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC28.35■■■□□ 2.13
USP54Q70EL1 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
USP54Q70EL1 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
USP54Q70EL1 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
USP54Q70EL1 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC28.34■■■□□ 2.13
USP54Q70EL1 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC28.34■■■□□ 2.13
USP54Q70EL1 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC28.34■■■□□ 2.13
USP54Q70EL1 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC28.34■■■□□ 2.13
USP54Q70EL1 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC28.34■■■□□ 2.13
USP54Q70EL1 BET1L-207ENST00000529614 560 ntTSL 5 BASIC28.34■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms