Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD3Q3KNS1 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.61■□□□□ 0.89
PTCHD3Q3KNS1 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.61■□□□□ 0.89
PTCHD3Q3KNS1 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.61■□□□□ 0.89
PTCHD3Q3KNS1 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD3Q3KNS1 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
PTCHD3Q3KNS1 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTCHD3Q3KNS1 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 AC092437.1-201ENST00000624794 1048 ntBASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
PTCHD3Q3KNS1 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD3Q3KNS1 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.59■□□□□ 0.89
PTCHD3Q3KNS1 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD3Q3KNS1 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD3Q3KNS1 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.59■□□□□ 0.89
PTCHD3Q3KNS1 AL137784.2-201ENST00000607332 1000 ntBASIC20.59■□□□□ 0.89
PTCHD3Q3KNS1 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD3Q3KNS1 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
PTCHD3Q3KNS1 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD3Q3KNS1 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD3Q3KNS1 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD3Q3KNS1 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTCHD3Q3KNS1 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
PTCHD3Q3KNS1 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTCHD3Q3KNS1 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTCHD3Q3KNS1 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTCHD3Q3KNS1 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTCHD3Q3KNS1 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTCHD3Q3KNS1 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTCHD3Q3KNS1 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTCHD3Q3KNS1 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.58■□□□□ 0.89
PTCHD3Q3KNS1 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.58■□□□□ 0.88
PTCHD3Q3KNS1 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PTCHD3Q3KNS1 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.58■□□□□ 0.88
PTCHD3Q3KNS1 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PTCHD3Q3KNS1 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PTCHD3Q3KNS1 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PTCHD3Q3KNS1 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTCHD3Q3KNS1 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD3Q3KNS1 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD3Q3KNS1 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.56■□□□□ 0.88
PTCHD3Q3KNS1 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.56■□□□□ 0.88
PTCHD3Q3KNS1 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.56■□□□□ 0.88
PTCHD3Q3KNS1 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.56■□□□□ 0.88
PTCHD3Q3KNS1 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.56■□□□□ 0.88
PTCHD3Q3KNS1 KRT18P61-201ENST00000585825 1298 ntBASIC20.56■□□□□ 0.88
PTCHD3Q3KNS1 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.56■□□□□ 0.88
PTCHD3Q3KNS1 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD3Q3KNS1 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD3Q3KNS1 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.56■□□□□ 0.88
PTCHD3Q3KNS1 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.56■□□□□ 0.88
PTCHD3Q3KNS1 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms