Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 KRT16P2-201ENST00000414673 1423 ntBASIC23.86■■□□□ 1.41
CIITAP33076 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CIITAP33076 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CIITAP33076 AC011767.1-201ENST00000617410 1153 ntBASIC23.86■■□□□ 1.41
CIITAP33076 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC23.86■■□□□ 1.41
CIITAP33076 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC23.86■■□□□ 1.41
CIITAP33076 STX5-203ENST00000394690 1568 ntTSL 5 BASIC23.86■■□□□ 1.41
CIITAP33076 TUB-203ENST00000534099 1759 ntTSL 2 BASIC23.86■■□□□ 1.41
CIITAP33076 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CIITAP33076 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CIITAP33076 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CIITAP33076 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CIITAP33076 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC23.85■■□□□ 1.41
CIITAP33076 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CIITAP33076 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CIITAP33076 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CIITAP33076 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC23.85■■□□□ 1.41
CIITAP33076 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CIITAP33076 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
CIITAP33076 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC23.85■■□□□ 1.41
CIITAP33076 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
CIITAP33076 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23.85■■□□□ 1.41
CIITAP33076 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CIITAP33076 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CIITAP33076 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC23.84■■□□□ 1.41
CIITAP33076 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC23.84■■□□□ 1.41
CIITAP33076 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC23.84■■□□□ 1.41
CIITAP33076 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC23.84■■□□□ 1.41
CIITAP33076 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CIITAP33076 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC23.84■■□□□ 1.41
CIITAP33076 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CIITAP33076 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CIITAP33076 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC23.84■■□□□ 1.41
CIITAP33076 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC23.84■■□□□ 1.41
CIITAP33076 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC23.84■■□□□ 1.41
CIITAP33076 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC23.84■■□□□ 1.41
CIITAP33076 AC080038.1-201ENST00000611274 1154 ntBASIC23.84■■□□□ 1.41
CIITAP33076 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CIITAP33076 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC23.83■■□□□ 1.41
CIITAP33076 AC079834.2-201ENST00000609776 1949 ntBASIC23.83■■□□□ 1.41
CIITAP33076 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC23.83■■□□□ 1.41
CIITAP33076 BRI3-207ENST00000539286 699 ntTSL 2 BASIC23.83■■□□□ 1.41
CIITAP33076 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC23.83■■□□□ 1.41
CIITAP33076 RAP2CP1-201ENST00000605103 478 ntBASIC23.83■■□□□ 1.41
CIITAP33076 AC120498.10-201ENST00000621827 505 ntBASIC23.83■■□□□ 1.41
CIITAP33076 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
CIITAP33076 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
CIITAP33076 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CIITAP33076 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
CIITAP33076 AC244015.2-201ENST00000616358 1861 ntBASIC23.83■■□□□ 1.4
CIITAP33076 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC23.83■■□□□ 1.4
CIITAP33076 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
CIITAP33076 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.4
CIITAP33076 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
CIITAP33076 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CIITAP33076 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CIITAP33076 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CIITAP33076 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC23.82■■□□□ 1.4
CIITAP33076 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC23.82■■□□□ 1.4
CIITAP33076 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CIITAP33076 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CIITAP33076 DUX4L16-201ENST00000555130 1264 ntBASIC23.82■■□□□ 1.4
CIITAP33076 RARRES2P11-201ENST00000635158 484 ntBASIC23.82■■□□□ 1.4
CIITAP33076 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.82■■□□□ 1.4
CIITAP33076 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CIITAP33076 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
CIITAP33076 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC23.82■■□□□ 1.4
CIITAP33076 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CIITAP33076 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CIITAP33076 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
CIITAP33076 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CIITAP33076 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC23.81■■□□□ 1.4
CIITAP33076 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC23.81■■□□□ 1.4
CIITAP33076 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CIITAP33076 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CIITAP33076 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
CIITAP33076 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CIITAP33076 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
CIITAP33076 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
CIITAP33076 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC23.81■■□□□ 1.4
CIITAP33076 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CIITAP33076 CDCA4P2-201ENST00000441182 718 ntBASIC23.81■■□□□ 1.4
CIITAP33076 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC23.81■■□□□ 1.4
CIITAP33076 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC23.81■■□□□ 1.4
CIITAP33076 AC073111.5-205ENST00000641717 521 ntBASIC23.81■■□□□ 1.4
CIITAP33076 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CIITAP33076 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CIITAP33076 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CIITAP33076 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CIITAP33076 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC23.8■■□□□ 1.4
CIITAP33076 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
CIITAP33076 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
CIITAP33076 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CIITAP33076 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CIITAP33076 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CIITAP33076 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC23.8■■□□□ 1.4
CIITAP33076 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
CIITAP33076 METTL26-203ENST00000397664 604 ntTSL 2 BASIC23.8■■□□□ 1.4
CIITAP33076 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CIITAP33076 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms