Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL355472.2-201ENST00000422958 438 ntBASIC18.47■□□□□ 0.55
COL8A1P27658 TSPY15P-201ENST00000457163 923 ntBASIC18.47■□□□□ 0.55
COL8A1P27658 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.47■□□□□ 0.55
COL8A1P27658 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.47■□□□□ 0.55
COL8A1P27658 EEF1DP3-203ENST00000566025 782 ntBASIC18.47■□□□□ 0.55
COL8A1P27658 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
COL8A1P27658 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.47■□□□□ 0.55
COL8A1P27658 AL591742.1-201ENST00000604433 565 ntBASIC18.47■□□□□ 0.55
COL8A1P27658 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL8A1P27658 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL8A1P27658 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL8A1P27658 AC022211.4-201ENST00000625094 2161 ntBASIC18.47■□□□□ 0.55
COL8A1P27658 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL8A1P27658 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC18.46■□□□□ 0.55
COL8A1P27658 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL8A1P27658 KRT17P1-201ENST00000399211 1546 ntBASIC18.46■□□□□ 0.55
COL8A1P27658 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL8A1P27658 ARMC10P1-201ENST00000313754 855 ntBASIC18.46■□□□□ 0.55
COL8A1P27658 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL8A1P27658 KRT18P35-201ENST00000510488 1269 ntBASIC18.46■□□□□ 0.55
COL8A1P27658 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.46■□□□□ 0.55
COL8A1P27658 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.46■□□□□ 0.55
COL8A1P27658 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL8A1P27658 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
COL8A1P27658 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL8A1P27658 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL8A1P27658 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
COL8A1P27658 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC18.45■□□□□ 0.54
COL8A1P27658 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
COL8A1P27658 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL8A1P27658 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL8A1P27658 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
COL8A1P27658 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL8A1P27658 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.45■□□□□ 0.54
COL8A1P27658 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL8A1P27658 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC18.45■□□□□ 0.54
COL8A1P27658 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.45■□□□□ 0.54
COL8A1P27658 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.45■□□□□ 0.54
COL8A1P27658 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.45■□□□□ 0.54
COL8A1P27658 AC060766.5-201ENST00000590539 871 ntBASIC18.45■□□□□ 0.54
COL8A1P27658 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL8A1P27658 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.45■□□□□ 0.54
COL8A1P27658 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL8A1P27658 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL8A1P27658 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL8A1P27658 AP003733.4-201ENST00000623785 1697 ntBASIC18.44■□□□□ 0.54
COL8A1P27658 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL8A1P27658 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL8A1P27658 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL8A1P27658 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.44■□□□□ 0.54
COL8A1P27658 AC087499.1-201ENST00000418141 1075 ntBASIC18.44■□□□□ 0.54
COL8A1P27658 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.44■□□□□ 0.54
COL8A1P27658 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.44■□□□□ 0.54
COL8A1P27658 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.44■□□□□ 0.54
COL8A1P27658 AC053503.5-201ENST00000601508 636 ntBASIC18.44■□□□□ 0.54
COL8A1P27658 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL8A1P27658 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL8A1P27658 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL8A1P27658 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL8A1P27658 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
COL8A1P27658 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
COL8A1P27658 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.43■□□□□ 0.54
COL8A1P27658 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.43■□□□□ 0.54
COL8A1P27658 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL8A1P27658 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL8A1P27658 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL8A1P27658 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL8A1P27658 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL8A1P27658 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.43■□□□□ 0.54
COL8A1P27658 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
COL8A1P27658 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
COL8A1P27658 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
COL8A1P27658 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.43■□□□□ 0.54
COL8A1P27658 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.43■□□□□ 0.54
COL8A1P27658 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC18.43■□□□□ 0.54
COL8A1P27658 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
COL8A1P27658 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL8A1P27658 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL8A1P27658 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC18.43■□□□□ 0.54
COL8A1P27658 LTK-203ENST00000453182 2412 ntTSL 2 BASIC18.43■□□□□ 0.54
COL8A1P27658 THRA-202ENST00000394121 2260 ntTSL 2 BASIC18.43■□□□□ 0.54
COL8A1P27658 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.42■□□□□ 0.54
COL8A1P27658 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.42■□□□□ 0.54
COL8A1P27658 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL8A1P27658 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.42■□□□□ 0.54
COL8A1P27658 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL8A1P27658 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.42■□□□□ 0.54
COL8A1P27658 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL8A1P27658 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL8A1P27658 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL8A1P27658 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.42■□□□□ 0.54
COL8A1P27658 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.42■□□□□ 0.54
COL8A1P27658 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC18.42■□□□□ 0.54
COL8A1P27658 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.42■□□□□ 0.54
COL8A1P27658 AC120498.10-201ENST00000621827 505 ntBASIC18.42■□□□□ 0.54
COL8A1P27658 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL8A1P27658 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.42■□□□□ 0.54
COL8A1P27658 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL8A1P27658 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
COL8A1P27658 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms