Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC22.29■■□□□ 1.16
BDNFP23560 CROCCP5-201ENST00000436658 830 ntBASIC22.29■■□□□ 1.16
BDNFP23560 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
BDNFP23560 SLC7A5P1-201ENST00000568957 537 ntBASIC22.29■■□□□ 1.16
BDNFP23560 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC22.29■■□□□ 1.16
BDNFP23560 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC22.29■■□□□ 1.16
BDNFP23560 MAZ-216ENST00000616501 991 ntTSL 5 BASIC22.29■■□□□ 1.16
BDNFP23560 AC010536.3-201ENST00000620306 533 ntBASIC22.29■■□□□ 1.16
BDNFP23560 AC120498.10-201ENST00000621827 505 ntBASIC22.29■■□□□ 1.16
BDNFP23560 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC22.29■■□□□ 1.16
BDNFP23560 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
BDNFP23560 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
BDNFP23560 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
BDNFP23560 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
BDNFP23560 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
BDNFP23560 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
BDNFP23560 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
BDNFP23560 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
BDNFP23560 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC22.28■■□□□ 1.16
BDNFP23560 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC22.28■■□□□ 1.16
BDNFP23560 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
BDNFP23560 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
BDNFP23560 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC22.28■■□□□ 1.16
BDNFP23560 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC22.28■■□□□ 1.16
BDNFP23560 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC22.28■■□□□ 1.16
BDNFP23560 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
BDNFP23560 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
BDNFP23560 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
BDNFP23560 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
BDNFP23560 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
BDNFP23560 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
BDNFP23560 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
BDNFP23560 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC22.27■■□□□ 1.16
BDNFP23560 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
BDNFP23560 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
BDNFP23560 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
BDNFP23560 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
BDNFP23560 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
BDNFP23560 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
BDNFP23560 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC22.27■■□□□ 1.16
BDNFP23560 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC22.27■■□□□ 1.16
BDNFP23560 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC22.27■■□□□ 1.16
BDNFP23560 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.27■■□□□ 1.16
BDNFP23560 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC22.27■■□□□ 1.16
BDNFP23560 GXYLT1P5-201ENST00000614548 1189 ntBASIC22.27■■□□□ 1.16
BDNFP23560 AC231657.2-201ENST00000624556 255 ntBASIC22.27■■□□□ 1.16
BDNFP23560 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC22.27■■□□□ 1.16
BDNFP23560 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
BDNFP23560 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC22.27■■□□□ 1.16
BDNFP23560 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
BDNFP23560 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
BDNFP23560 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.15
BDNFP23560 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
BDNFP23560 C11orf96-202ENST00000528572 1834 ntBASIC22.27■■□□□ 1.15
BDNFP23560 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
BDNFP23560 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
BDNFP23560 MIR663A-201ENST00000385250 93 ntBASIC22.26■■□□□ 1.15
BDNFP23560 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
BDNFP23560 PPP1R14BP3-201ENST00000509033 445 ntBASIC22.26■■□□□ 1.15
BDNFP23560 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC22.26■■□□□ 1.15
BDNFP23560 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
BDNFP23560 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
BDNFP23560 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
BDNFP23560 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.26■■□□□ 1.15
BDNFP23560 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
BDNFP23560 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BDNFP23560 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC22.25■■□□□ 1.15
BDNFP23560 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
BDNFP23560 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BDNFP23560 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BDNFP23560 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BDNFP23560 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BDNFP23560 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BDNFP23560 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BDNFP23560 EP400NL-214ENST00000641289 2402 ntBASIC22.25■■□□□ 1.15
BDNFP23560 ID1-201ENST00000376105 1233 ntBASIC22.25■■□□□ 1.15
BDNFP23560 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
BDNFP23560 AC007322.1-201ENST00000426983 750 ntBASIC22.25■■□□□ 1.15
BDNFP23560 AC006970.2-201ENST00000450065 779 ntBASIC22.25■■□□□ 1.15
BDNFP23560 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC22.25■■□□□ 1.15
BDNFP23560 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC22.25■■□□□ 1.15
BDNFP23560 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
BDNFP23560 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
BDNFP23560 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BDNFP23560 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BDNFP23560 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
BDNFP23560 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BDNFP23560 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
BDNFP23560 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
BDNFP23560 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC22.25■■□□□ 1.15
BDNFP23560 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
BDNFP23560 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
BDNFP23560 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC22.24■■□□□ 1.15
BDNFP23560 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
BDNFP23560 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
BDNFP23560 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
BDNFP23560 BMP1-204ENST00000397814 836 ntTSL 4 BASIC22.24■■□□□ 1.15
BDNFP23560 UQCRFS1P1-201ENST00000435169 820 ntBASIC22.24■■□□□ 1.15
BDNFP23560 CNN2P6-201ENST00000439038 900 ntBASIC22.24■■□□□ 1.15
BDNFP23560 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms