Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
COL5A1P20908 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL5A1P20908 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
COL5A1P20908 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.42■□□□□ 0.86
COL5A1P20908 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.42■□□□□ 0.86
COL5A1P20908 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
COL5A1P20908 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.42■□□□□ 0.86
COL5A1P20908 AC128676.1-201ENST00000454392 318 ntBASIC20.41■□□□□ 0.86
COL5A1P20908 UNC93B4-201ENST00000505679 747 ntBASIC20.41■□□□□ 0.86
COL5A1P20908 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.41■□□□□ 0.86
COL5A1P20908 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.41■□□□□ 0.86
COL5A1P20908 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.41■□□□□ 0.86
COL5A1P20908 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.41■□□□□ 0.86
COL5A1P20908 AC060766.5-201ENST00000590539 871 ntBASIC20.41■□□□□ 0.86
COL5A1P20908 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A1P20908 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
COL5A1P20908 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A1P20908 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A1P20908 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.41■□□□□ 0.86
COL5A1P20908 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A1P20908 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.41■□□□□ 0.86
COL5A1P20908 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.41■□□□□ 0.86
COL5A1P20908 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL5A1P20908 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.41■□□□□ 0.86
COL5A1P20908 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.41■□□□□ 0.86
COL5A1P20908 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
COL5A1P20908 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.4■□□□□ 0.86
COL5A1P20908 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A1P20908 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
COL5A1P20908 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
COL5A1P20908 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.4■□□□□ 0.86
COL5A1P20908 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.4■□□□□ 0.86
COL5A1P20908 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
COL5A1P20908 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.4■□□□□ 0.86
COL5A1P20908 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A1P20908 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
COL5A1P20908 AC008403.3-201ENST00000598924 454 ntBASIC20.4■□□□□ 0.86
COL5A1P20908 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.4■□□□□ 0.86
COL5A1P20908 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A1P20908 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A1P20908 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A1P20908 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.4■□□□□ 0.86
COL5A1P20908 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A1P20908 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL5A1P20908 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
COL5A1P20908 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
COL5A1P20908 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.86
COL5A1P20908 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.39■□□□□ 0.86
COL5A1P20908 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.86
COL5A1P20908 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.39■□□□□ 0.86
COL5A1P20908 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.39■□□□□ 0.86
COL5A1P20908 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
COL5A1P20908 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL5A1P20908 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.39■□□□□ 0.85
COL5A1P20908 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL5A1P20908 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
COL5A1P20908 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL5A1P20908 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL5A1P20908 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.39■□□□□ 0.85
COL5A1P20908 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.39■□□□□ 0.85
COL5A1P20908 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.38■□□□□ 0.85
COL5A1P20908 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A1P20908 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A1P20908 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.38■□□□□ 0.85
COL5A1P20908 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A1P20908 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A1P20908 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
COL5A1P20908 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A1P20908 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A1P20908 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.38■□□□□ 0.85
COL5A1P20908 AL596275.1-201ENST00000423464 877 ntBASIC20.38■□□□□ 0.85
COL5A1P20908 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.38■□□□□ 0.85
COL5A1P20908 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A1P20908 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A1P20908 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A1P20908 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
COL5A1P20908 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL5A1P20908 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.37■□□□□ 0.85
COL5A1P20908 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A1P20908 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
COL5A1P20908 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.37■□□□□ 0.85
COL5A1P20908 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A1P20908 AC061975.6-201ENST00000579045 1553 ntBASIC20.37■□□□□ 0.85
COL5A1P20908 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
COL5A1P20908 AC137767.1-201ENST00000602918 1920 ntBASIC20.37■□□□□ 0.85
COL5A1P20908 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A1P20908 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.37■□□□□ 0.85
COL5A1P20908 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A1P20908 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A1P20908 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
COL5A1P20908 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.37■□□□□ 0.85
COL5A1P20908 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A1P20908 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.37■□□□□ 0.85
COL5A1P20908 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.37■□□□□ 0.85
COL5A1P20908 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.37■□□□□ 0.85
COL5A1P20908 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.37■□□□□ 0.85
COL5A1P20908 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A1P20908 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL5A1P20908 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL5A1P20908 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms