Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.26■□□□□ 0.83
LDLRP01130 AC006455.2-201ENST00000429931 906 ntBASIC20.26■□□□□ 0.83
LDLRP01130 AC123595.1-201ENST00000440769 1046 ntBASIC20.26■□□□□ 0.83
LDLRP01130 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.26■□□□□ 0.83
LDLRP01130 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.26■□□□□ 0.83
LDLRP01130 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.26■□□□□ 0.83
LDLRP01130 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
LDLRP01130 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LDLRP01130 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDLRP01130 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
LDLRP01130 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDLRP01130 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
LDLRP01130 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDLRP01130 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDLRP01130 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDLRP01130 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LDLRP01130 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LDLRP01130 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDLRP01130 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.25■□□□□ 0.83
LDLRP01130 AC027612.3-201ENST00000413684 1047 ntBASIC20.25■□□□□ 0.83
LDLRP01130 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.25■□□□□ 0.83
LDLRP01130 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.25■□□□□ 0.83
LDLRP01130 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDLRP01130 AC092667.1-201ENST00000434301 2586 ntBASIC20.25■□□□□ 0.83
LDLRP01130 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.25■□□□□ 0.83
LDLRP01130 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LDLRP01130 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LDLRP01130 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
LDLRP01130 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LDLRP01130 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.24■□□□□ 0.83
LDLRP01130 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
LDLRP01130 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.24■□□□□ 0.83
LDLRP01130 MIR3181-201ENST00000578512 73 ntBASIC20.24■□□□□ 0.83
LDLRP01130 AC126544.1-201ENST00000580842 1059 ntBASIC20.24■□□□□ 0.83
LDLRP01130 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.24■□□□□ 0.83
LDLRP01130 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LDLRP01130 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LDLRP01130 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LDLRP01130 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LDLRP01130 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
LDLRP01130 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
LDLRP01130 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDLRP01130 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDLRP01130 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.23■□□□□ 0.83
LDLRP01130 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.23■□□□□ 0.83
LDLRP01130 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
LDLRP01130 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDLRP01130 HLA-L-209ENST00000420110 1011 ntBASIC20.23■□□□□ 0.83
LDLRP01130 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.23■□□□□ 0.83
LDLRP01130 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.23■□□□□ 0.83
LDLRP01130 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.23■□□□□ 0.83
LDLRP01130 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
LDLRP01130 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.23■□□□□ 0.83
LDLRP01130 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.23■□□□□ 0.83
LDLRP01130 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.23■□□□□ 0.83
LDLRP01130 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
LDLRP01130 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.23■□□□□ 0.83
LDLRP01130 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LDLRP01130 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDLRP01130 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDLRP01130 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
LDLRP01130 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
LDLRP01130 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDLRP01130 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDLRP01130 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDLRP01130 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDLRP01130 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.22■□□□□ 0.83
LDLRP01130 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDLRP01130 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LDLRP01130 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.22■□□□□ 0.83
LDLRP01130 AL358852.1-201ENST00000623174 1268 ntBASIC20.22■□□□□ 0.83
LDLRP01130 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.22■□□□□ 0.83
LDLRP01130 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDLRP01130 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDLRP01130 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.22■□□□□ 0.83
LDLRP01130 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDLRP01130 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LDLRP01130 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LDLRP01130 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.21■□□□□ 0.83
LDLRP01130 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDLRP01130 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.21■□□□□ 0.83
LDLRP01130 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.21■□□□□ 0.83
LDLRP01130 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDLRP01130 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDLRP01130 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
LDLRP01130 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
LDLRP01130 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.21■□□□□ 0.83
LDLRP01130 TSPY26P-201ENST00000476365 1326 ntBASIC20.21■□□□□ 0.83
LDLRP01130 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDLRP01130 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDLRP01130 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDLRP01130 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LDLRP01130 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDLRP01130 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LDLRP01130 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.2■□□□□ 0.82
LDLRP01130 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LDLRP01130 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.2■□□□□ 0.82
LDLRP01130 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LDLRP01130 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LDLRP01130 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms