Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 BCLAF1-221ENST00000534762 744 ntTSL 33.52□□□□□ -1.853e-6■□□□□ 9.5
CDC40O60508 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.5□□□□□ -1.853e-6■□□□□ 9.5
CDC40O60508 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.853e-6■□□□□ 9.5
CDC40O60508 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC3.46□□□□□ -1.863e-6■□□□□ 9.5
CDC40O60508 BCLAF1-222ENST00000534792 552 ntTSL 23.36□□□□□ -1.873e-6■□□□□ 9.5
CDC40O60508 FOXN3-213ENST00000556916 467 ntTSL 33.3□□□□□ -1.883e-6■□□□□ 9.5
CDC40O60508 BCLAF1-212ENST00000530429 3167 ntTSL 53.28□□□□□ -1.883e-6■□□□□ 9.5
CDC40O60508 NREP-214ENST00000507742 577 ntTSL 23.24□□□□□ -1.893e-6■□□□□ 9.5
CDC40O60508 FOXN3-203ENST00000553353 366 ntTSL 33.03□□□□□ -1.923e-6■□□□□ 9.5
CDC40O60508 BCLAF1-206ENST00000527613 5640 ntTSL 1 (best)3□□□□□ -1.933e-6■□□□□ 9.5
CDC40O60508 NREP-210ENST00000503429 1079 ntTSL 1 (best)2.99□□□□□ -1.933e-6■□□□□ 9.5
CDC40O60508 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.67□□□□□ -1.983e-6■□□□□ 9.5
CDC40O60508 BCLAF1-220ENST00000534321 519 ntTSL 22.52□□□□□ -2.013e-6■□□□□ 9.5
CDC40O60508 BCLAF1-215ENST00000532076 560 ntTSL 41.87□□□□□ -2.113e-6■□□□□ 9.5
CDC40O60508 BCLAF1-224ENST00000640069 7719 ntTSL 51.46□□□□□ -2.183e-6■□□□□ 9.5
CDC40O60508 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.73■□□□□ 0.276e-7■□□□□ 9.5
CDC40O60508 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.026e-7■□□□□ 9.5
CDC40O60508 CCDC183-205ENST00000481601 1556 ntTSL 214.89□□□□□ -0.036e-7■□□□□ 9.5
CDC40O60508 CCDC183-202ENST00000371682 1437 ntTSL 514.72□□□□□ -0.056e-7■□□□□ 9.5
CDC40O60508 CCDC183-204ENST00000479371 1786 ntTSL 1 (best)14.29□□□□□ -0.126e-7■□□□□ 9.5
CDC40O60508 CCDC183-203ENST00000430612 2321 ntTSL 213.07□□□□□ -0.326e-7■□□□□ 9.5
CDC40O60508 MT-ND6-201ENST00000361681 525 ntAPPRIS P1 BASIC11.58□□□□□ -0.563e-37■□□□□ 9.4
CDC40O60508 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.351e-8■□□□□ 9.4
CDC40O60508 ITGB5-207ENST00000481591 1202 ntTSL 516.61■□□□□ 0.251e-8■□□□□ 9.4
CDC40O60508 NAP1L4-209ENST00000492594 570 ntTSL 316.43■□□□□ 0.223e-9■□□□□ 9.4
CDC40O60508 NAP1L4-211ENST00000526023 477 ntTSL 516.23■□□□□ 0.193e-9■□□□□ 9.4
CDC40O60508 ITGB5-209ENST00000488466 971 ntTSL 514.97□□□□□ -0.011e-8■□□□□ 9.4
CDC40O60508 ITGB5-203ENST00000461306 577 ntTSL 410.22□□□□□ -0.771e-8■□□□□ 9.4
CDC40O60508 DAZAP1-209ENST00000590419 508 ntTSL 313.46□□□□□ -0.251e-7■□□□□ 9.4
CDC40O60508 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.41e-12■□□□□ 9.4
CDC40O60508 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.351e-12■□□□□ 9.4
CDC40O60508 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.061e-12■□□□□ 9.4
CDC40O60508 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.231e-12■□□□□ 9.4
CDC40O60508 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.312e-7■□□□□ 9.4
CDC40O60508 HSP90AA1-202ENST00000334701 3510 ntTSL 1 (best) BASIC11.56□□□□□ -0.562e-7■□□□□ 9.4
CDC40O60508 HSP90AA1-204ENST00000554401 1710 ntTSL 1 (best)7.8□□□□□ -1.162e-7■□□□□ 9.4
CDC40O60508 LINC00854-214ENST00000615433 874 ntAPPRIS ALT2 TSL 58.6□□□□□ -1.032e-17■□□□□ 9.4
CDC40O60508 LINC00854-204ENST00000594691 649 ntAPPRIS P5 TSL 5 BASIC8.04□□□□□ -1.122e-17■□□□□ 9.4
CDC40O60508 U2.6-201ENST00000619225 191 ntBASIC1.81□□□□□ -2.122e-17■□□□□ 9.4
CDC40O60508 SEPT2-244ENST00000495463 501 ntTSL 425.81■■□□□ 1.727e-7■□□□□ 9.3
CDC40O60508 SEPT2-234ENST00000475474 749 ntTSL 223.92■■□□□ 1.427e-7■□□□□ 9.3
CDC40O60508 SEPT2-238ENST00000482304 740 ntTSL 223.13■■□□□ 1.297e-7■□□□□ 9.3
CDC40O60508 SEPT2-227ENST00000462147 576 ntTSL 422.71■■□□□ 1.237e-7■□□□□ 9.3
CDC40O60508 SEPT2-229ENST00000466211 584 ntTSL 321.58■■□□□ 1.057e-7■□□□□ 9.3
CDC40O60508 SEPT2-216ENST00000434955 480 ntTSL 321.43■■□□□ 1.027e-7■□□□□ 9.3
CDC40O60508 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.18■□□□□ 0.987e-7■□□□□ 9.3
CDC40O60508 SEPT2-217ENST00000436795 775 ntTSL 520.7■□□□□ 0.97e-7■□□□□ 9.3
CDC40O60508 SEPT2-209ENST00000411484 561 ntTSL 420.63■□□□□ 0.897e-7■□□□□ 9.3
CDC40O60508 SEPT2-226ENST00000461048 1163 ntTSL 1 (best)20.25■□□□□ 0.837e-7■□□□□ 9.3
CDC40O60508 SEPT2-243ENST00000494824 565 ntTSL 520.25■□□□□ 0.837e-7■□□□□ 9.3
CDC40O60508 SEPT2-231ENST00000469175 486 ntTSL 320.02■□□□□ 0.87e-7■□□□□ 9.3
CDC40O60508 SEPT2-215ENST00000429791 724 ntTSL 419.52■□□□□ 0.727e-7■□□□□ 9.3
CDC40O60508 SEPT2-210ENST00000420786 539 ntTSL 518.14■□□□□ 0.497e-7■□□□□ 9.3
CDC40O60508 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.55■□□□□ 0.48e-8■□□□□ 9.3
CDC40O60508 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.347e-7■□□□□ 9.3
CDC40O60508 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.44■□□□□ 0.228e-8■□□□□ 9.3
CDC40O60508 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.42■□□□□ 0.227e-7■□□□□ 9.3
CDC40O60508 SEPT2-218ENST00000437066 574 ntTSL 416.28■□□□□ 0.27e-7■□□□□ 9.3
CDC40O60508 SEPT2-213ENST00000428282 1005 ntTSL 316.2■□□□□ 0.187e-7■□□□□ 9.3
CDC40O60508 SEPT2-242ENST00000492978 775 ntTSL 316.2■□□□□ 0.187e-7■□□□□ 9.3
CDC40O60508 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.15■□□□□ 0.187e-7■□□□□ 9.3
CDC40O60508 WDR59-214ENST00000568323 558 ntTSL 516.05■□□□□ 0.168e-8■□□□□ 9.3
CDC40O60508 SRRM2-228ENST00000576878 1141 ntTSL 215.93■□□□□ 0.146e-10■□□□□ 9.3
CDC40O60508 WDR59-211ENST00000564859 488 ntTSL 314.96□□□□□ -0.018e-8■□□□□ 9.3
CDC40O60508 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.18□□□□□ -0.148e-8■□□□□ 9.3
CDC40O60508 SRRM2-206ENST00000571041 498 ntTSL 414.11□□□□□ -0.156e-10■□□□□ 9.3
CDC40O60508 SRRM2-204ENST00000570705 675 ntTSL 314.08□□□□□ -0.166e-10■□□□□ 9.3
CDC40O60508 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.218e-8■□□□□ 9.3
CDC40O60508 ARHGEF10L-206ENST00000469726 4585 ntTSL 212.19□□□□□ -0.468e-8■□□□□ 9.3
CDC40O60508 IP6K1-201ENST00000321599 4456 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.478e-8■□□□□ 9.3
CDC40O60508 ARHGEF10L-201ENST00000167825 3018 ntTSL 212.05□□□□□ -0.488e-8■□□□□ 9.3
CDC40O60508 IP6K1-202ENST00000395238 4117 ntTSL 3 BASIC11.98□□□□□ -0.498e-8■□□□□ 9.3
CDC40O60508 ARHGEF10L-203ENST00000375408 3685 ntTSL 5 BASIC11.13□□□□□ -0.638e-8■□□□□ 9.3
CDC40O60508 SEPT2-204ENST00000391973 3701 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.657e-7■□□□□ 9.3
CDC40O60508 SEPT2-235ENST00000475823 371 ntTSL 310.6□□□□□ -0.717e-7■□□□□ 9.3
CDC40O60508 SEPT2-201ENST00000360051 3613 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.727e-7■□□□□ 9.3
CDC40O60508 WDR59-223ENST00000616369 1953 ntTSL 1 (best) BASIC10.48□□□□□ -0.738e-8■□□□□ 9.3
CDC40O60508 SEPT2-224ENST00000457335 570 ntTSL 49.98□□□□□ -0.817e-7■□□□□ 9.3
CDC40O60508 SEPT2-212ENST00000425899 738 ntTSL 59.82□□□□□ -0.847e-7■□□□□ 9.3
CDC40O60508 WDR59-204ENST00000562331 570 ntTSL 49.53□□□□□ -0.888e-8■□□□□ 9.3
CDC40O60508 SEPT2-230ENST00000467971 571 ntTSL 29.3□□□□□ -0.927e-7■□□□□ 9.3
CDC40O60508 SEPT2-214ENST00000428524 644 ntTSL 59.25□□□□□ -0.937e-7■□□□□ 9.3
CDC40O60508 ARHGEF10L-205ENST00000466782 482 ntTSL 38.89□□□□□ -0.998e-8■□□□□ 9.3
CDC40O60508 SEPT2-206ENST00000402092 3333 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.997e-7■□□□□ 9.3
CDC40O60508 SEPT2-219ENST00000441533 372 ntTSL 57.82□□□□□ -1.167e-7■□□□□ 9.3
CDC40O60508 SEPT2-207ENST00000407017 650 ntTSL 47.14□□□□□ -1.277e-7■□□□□ 9.3
CDC40O60508 SEPT2-221ENST00000445030 575 ntTSL 37.14□□□□□ -1.277e-7■□□□□ 9.3
CDC40O60508 SEPT2-241ENST00000484740 563 ntTSL 35.41□□□□□ -1.547e-7■□□□□ 9.3
CDC40O60508 SEPT2-220ENST00000443492 558 ntTSL 55.38□□□□□ -1.557e-7■□□□□ 9.3
CDC40O60508 SEPT2-222ENST00000449239 599 ntTSL 24.75□□□□□ -1.657e-7■□□□□ 9.3
CDC40O60508 SEPT2-228ENST00000464128 565 ntTSL 43.84□□□□□ -1.797e-7■□□□□ 9.3
CDC40O60508 SEPT2-232ENST00000469434 583 ntTSL 33.84□□□□□ -1.797e-7■□□□□ 9.3
CDC40O60508 SEPT2-233ENST00000473479 659 ntTSL 22.96□□□□□ -1.947e-7■□□□□ 9.3
CDC40O60508 SRSF2-209ENST00000586778 1001 ntTSL 23.22□□□□□ -1.893e-14■□□□□ 9.3
CDC40O60508 RPL13A-211ENST00000486930 652 ntTSL 314.41□□□□□ -0.12e-8■□□□□ 9.3
CDC40O60508 HNRNPA2B1-206ENST00000490912 5328 ntTSL 214.17□□□□□ -0.144e-16■□□□□ 9.3
CDC40O60508 RPL13A-204ENST00000472481 728 ntTSL 213.88□□□□□ -0.192e-8■□□□□ 9.3
CDC40O60508 HNRNPA2B1-203ENST00000360787 1724 ntTSL 513.67□□□□□ -0.224e-16■□□□□ 9.3
CDC40O60508 HNRNPA2B1-204ENST00000463181 6284 ntTSL 213.38□□□□□ -0.274e-16■□□□□ 9.3
CDC40O60508 BRD4-201ENST00000263377 7169 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.632e-8■□□□□ 9.3
Retrieved 100 of 5,364 protein–RNA pairs in 247 ms