Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 AL049597.2-201ENST00000565575 961 ntBASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.2■□□□□ 0.66
COL6A6A6NMZ7 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A6A6NMZ7 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A6A6NMZ7 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
COL6A6A6NMZ7 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A6A6NMZ7 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A6A6NMZ7 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A6A6NMZ7 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
COL6A6A6NMZ7 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A6A6NMZ7 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A6A6NMZ7 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A6A6NMZ7 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A6A6NMZ7 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 AL034346.1-201ENST00000568244 1277 ntBASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 ABCB10P4-201ENST00000566803 2184 ntBASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.18■□□□□ 0.66
COL6A6A6NMZ7 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 AC133681.1-201ENST00000465482 601 ntBASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 AC243732.1-201ENST00000612648 864 ntBASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 AC092865.7-201ENST00000641832 219 ntBASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 AC138932.3-201ENST00000567634 1902 ntBASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 AC008175.2-201ENST00000612840 297 ntBASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A6A6NMZ7 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 LINC01960-201ENST00000563759 1884 ntBASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 AL353708.3-201ENST00000610272 989 ntBASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A6A6NMZ7 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.15■□□□□ 0.66
COL6A6A6NMZ7 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms