Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHA1Q9Y5I3 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 POU5F1P4-201ENST00000413175 1085 ntBASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 DUX4L16-201ENST00000555130 1264 ntBASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 MDK-213ENST00000617138 635 ntTSL 2 BASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHA1Q9Y5I3 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHA1Q9Y5I3 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHA1Q9Y5I3 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHA1Q9Y5I3 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHA1Q9Y5I3 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHA1Q9Y5I3 SLC7A5P1-201ENST00000568957 537 ntBASIC24.29■■□□□ 1.48
PCDHA1Q9Y5I3 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC24.29■■□□□ 1.48
PCDHA1Q9Y5I3 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC24.29■■□□□ 1.48
PCDHA1Q9Y5I3 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC24.29■■□□□ 1.48
PCDHA1Q9Y5I3 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHA1Q9Y5I3 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 AC120498.10-201ENST00000621827 505 ntBASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 AC061975.6-201ENST00000579045 1553 ntBASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHA1Q9Y5I3 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHA1Q9Y5I3 ME2-206ENST00000638410 2289 ntTSL 5 BASIC24.27■■□□□ 1.48
PCDHA1Q9Y5I3 ME2-210ENST00000639255 2262 ntTSL 5 BASIC24.27■■□□□ 1.48
PCDHA1Q9Y5I3 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHA1Q9Y5I3 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
PCDHA1Q9Y5I3 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC24.27■■□□□ 1.48
PCDHA1Q9Y5I3 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHA1Q9Y5I3 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.27■■□□□ 1.48
PCDHA1Q9Y5I3 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHA1Q9Y5I3 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC24.27■■□□□ 1.48
PCDHA1Q9Y5I3 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHA1Q9Y5I3 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC24.27■■□□□ 1.48
PCDHA1Q9Y5I3 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 AC010536.3-201ENST00000620306 533 ntBASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 C11orf96-202ENST00000528572 1834 ntBASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC24.26■■□□□ 1.47
PCDHA1Q9Y5I3 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC24.25■■□□□ 1.47
PCDHA1Q9Y5I3 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
PCDHA1Q9Y5I3 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC24.25■■□□□ 1.47
PCDHA1Q9Y5I3 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC24.25■■□□□ 1.47
PCDHA1Q9Y5I3 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC24.25■■□□□ 1.47
PCDHA1Q9Y5I3 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHA1Q9Y5I3 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHA1Q9Y5I3 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHA1Q9Y5I3 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHA1Q9Y5I3 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHA1Q9Y5I3 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHA1Q9Y5I3 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
PCDHA1Q9Y5I3 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 CROCCP5-201ENST00000436658 830 ntBASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 TK2-208ENST00000545043 1120 ntTSL 2 BASIC24.24■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms