Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.5
CTDP1Q9Y5B0 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CTDP1Q9Y5B0 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CTDP1Q9Y5B0 LTK-203ENST00000453182 2412 ntTSL 2 BASIC24.45■■□□□ 1.5
CTDP1Q9Y5B0 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
CTDP1Q9Y5B0 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.5
CTDP1Q9Y5B0 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
CTDP1Q9Y5B0 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC24.44■■□□□ 1.5
CTDP1Q9Y5B0 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CTDP1Q9Y5B0 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC24.44■■□□□ 1.5
CTDP1Q9Y5B0 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC24.44■■□□□ 1.5
CTDP1Q9Y5B0 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC24.44■■□□□ 1.5
CTDP1Q9Y5B0 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC24.44■■□□□ 1.5
CTDP1Q9Y5B0 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
CTDP1Q9Y5B0 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC24.44■■□□□ 1.5
CTDP1Q9Y5B0 AC008694.1-202ENST00000636953 945 ntBASIC24.44■■□□□ 1.5
CTDP1Q9Y5B0 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
CTDP1Q9Y5B0 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC24.44■■□□□ 1.5
CTDP1Q9Y5B0 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
CTDP1Q9Y5B0 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CTDP1Q9Y5B0 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC24.43■■□□□ 1.5
CTDP1Q9Y5B0 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
CTDP1Q9Y5B0 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC24.43■■□□□ 1.5
CTDP1Q9Y5B0 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC24.43■■□□□ 1.5
CTDP1Q9Y5B0 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CTDP1Q9Y5B0 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC24.43■■□□□ 1.5
CTDP1Q9Y5B0 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
CTDP1Q9Y5B0 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
CTDP1Q9Y5B0 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC24.43■■□□□ 1.5
CTDP1Q9Y5B0 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CTDP1Q9Y5B0 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CTDP1Q9Y5B0 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC24.43■■□□□ 1.5
CTDP1Q9Y5B0 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC24.43■■□□□ 1.5
CTDP1Q9Y5B0 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CTDP1Q9Y5B0 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC24.42■■□□□ 1.5
CTDP1Q9Y5B0 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CTDP1Q9Y5B0 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CTDP1Q9Y5B0 APTR-203ENST00000430801 583 ntTSL 5 BASIC24.42■■□□□ 1.5
CTDP1Q9Y5B0 AC133552.2-202ENST00000575694 574 ntBASIC24.42■■□□□ 1.5
CTDP1Q9Y5B0 GAMT-205ENST00000640762 751 ntTSL 5 BASIC24.42■■□□□ 1.5
CTDP1Q9Y5B0 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC24.42■■□□□ 1.5
CTDP1Q9Y5B0 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC24.42■■□□□ 1.5
CTDP1Q9Y5B0 AC092053.2-201ENST00000640557 1818 ntBASIC24.42■■□□□ 1.5
CTDP1Q9Y5B0 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CTDP1Q9Y5B0 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CTDP1Q9Y5B0 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
CTDP1Q9Y5B0 RARG-204ENST00000543726 1779 ntTSL 2 BASIC24.42■■□□□ 1.5
CTDP1Q9Y5B0 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CTDP1Q9Y5B0 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
CTDP1Q9Y5B0 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CTDP1Q9Y5B0 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
CTDP1Q9Y5B0 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC24.41■■□□□ 1.5
CTDP1Q9Y5B0 AC142086.2-201ENST00000569753 217 ntBASIC24.41■■□□□ 1.5
CTDP1Q9Y5B0 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC24.41■■□□□ 1.5
CTDP1Q9Y5B0 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CTDP1Q9Y5B0 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
CTDP1Q9Y5B0 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
CTDP1Q9Y5B0 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CTDP1Q9Y5B0 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC24.4■■□□□ 1.5
CTDP1Q9Y5B0 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CTDP1Q9Y5B0 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CTDP1Q9Y5B0 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC24.4■■□□□ 1.5
CTDP1Q9Y5B0 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CTDP1Q9Y5B0 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CTDP1Q9Y5B0 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CTDP1Q9Y5B0 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
CTDP1Q9Y5B0 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
CTDP1Q9Y5B0 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC24.39■■□□□ 1.49
CTDP1Q9Y5B0 AL138781.1-201ENST00000566567 1274 ntBASIC24.39■■□□□ 1.49
CTDP1Q9Y5B0 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC24.39■■□□□ 1.49
CTDP1Q9Y5B0 AC069236.1-201ENST00000604339 616 ntBASIC24.39■■□□□ 1.49
CTDP1Q9Y5B0 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.49
CTDP1Q9Y5B0 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CTDP1Q9Y5B0 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CTDP1Q9Y5B0 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
CTDP1Q9Y5B0 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CTDP1Q9Y5B0 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
CTDP1Q9Y5B0 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 AC068338.2-201ENST00000563278 1430 ntBASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 CYP2T1P-201ENST00000432607 1285 ntBASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 GUSBP6-202ENST00000438529 1198 ntBASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 AC007322.4-201ENST00000509611 723 ntBASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 RGMA-211ENST00000557420 989 ntTSL 3 BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 C1orf229-201ENST00000623686 2258 ntBASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
CTDP1Q9Y5B0 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC24.37■■□□□ 1.49
CTDP1Q9Y5B0 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms