Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 PARP1-202ENST00000366792 553 ntTSL 3 BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 CLIC4P2-201ENST00000601934 717 ntBASIC23.17■■□□□ 1.3
RNF39Q9H2S5 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 AC080038.3-201ENST00000623346 1952 ntBASIC23.17■■□□□ 1.3
RNF39Q9H2S5 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RNF39Q9H2S5 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC23.16■■□□□ 1.3
RNF39Q9H2S5 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RNF39Q9H2S5 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RNF39Q9H2S5 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF39Q9H2S5 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC23.16■■□□□ 1.3
RNF39Q9H2S5 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF39Q9H2S5 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RNF39Q9H2S5 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF39Q9H2S5 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
RNF39Q9H2S5 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
RNF39Q9H2S5 TMF1P1-201ENST00000576058 373 ntBASIC23.16■■□□□ 1.3
RNF39Q9H2S5 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF39Q9H2S5 CSNK1A1-209ENST00000606299 1075 ntTSL 3 BASIC23.16■■□□□ 1.3
RNF39Q9H2S5 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RNF39Q9H2S5 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF39Q9H2S5 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RNF39Q9H2S5 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 AC010141.2-201ENST00000452426 721 ntBASIC23.15■■□□□ 1.3
RNF39Q9H2S5 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 EEF1DP3-203ENST00000566025 782 ntBASIC23.15■■□□□ 1.3
RNF39Q9H2S5 AC104072.1-201ENST00000568817 668 ntBASIC23.15■■□□□ 1.3
RNF39Q9H2S5 AC138907.5-202ENST00000569484 235 ntBASIC23.15■■□□□ 1.3
RNF39Q9H2S5 AC097478.2-201ENST00000610572 514 ntBASIC23.15■■□□□ 1.3
RNF39Q9H2S5 TFG-210ENST00000620299 1289 ntTSL 5 BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 AC009118.3-201ENST00000622896 873 ntBASIC23.15■■□□□ 1.3
RNF39Q9H2S5 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC23.15■■□□□ 1.3
RNF39Q9H2S5 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.3
RNF39Q9H2S5 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
RNF39Q9H2S5 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
RNF39Q9H2S5 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC23.14■■□□□ 1.29
RNF39Q9H2S5 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC23.14■■□□□ 1.29
RNF39Q9H2S5 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
RNF39Q9H2S5 HLA-F-220ENST00000434407 884 ntBASIC23.14■■□□□ 1.29
RNF39Q9H2S5 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
RNF39Q9H2S5 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC23.14■■□□□ 1.29
RNF39Q9H2S5 DUX4L16-201ENST00000555130 1264 ntBASIC23.14■■□□□ 1.29
RNF39Q9H2S5 AL031058.1-201ENST00000561592 888 ntBASIC23.14■■□□□ 1.29
RNF39Q9H2S5 AC068631.1-255ENST00000608173 588 ntTSL 5 BASIC23.14■■□□□ 1.29
RNF39Q9H2S5 AC022960.2-201ENST00000616300 666 ntBASIC23.14■■□□□ 1.29
RNF39Q9H2S5 AC006927.4-201ENST00000639187 543 ntBASIC23.14■■□□□ 1.29
RNF39Q9H2S5 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
RNF39Q9H2S5 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 METTL26-203ENST00000397664 604 ntTSL 2 BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 SDR42E1P3-201ENST00000438345 502 ntBASIC23.13■■□□□ 1.29
RNF39Q9H2S5 RSL24D1P2-201ENST00000445584 366 ntBASIC23.13■■□□□ 1.29
RNF39Q9H2S5 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 MAZ-216ENST00000616501 991 ntTSL 5 BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 MYCNOS-205ENST00000641950 531 ntBASIC23.13■■□□□ 1.29
RNF39Q9H2S5 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
RNF39Q9H2S5 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms