Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP3Q96DZ5 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP3Q96DZ5 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CLIP3Q96DZ5 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP3Q96DZ5 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP3Q96DZ5 AC026185.1-201ENST00000445748 174 ntBASIC20.29■□□□□ 0.84
CLIP3Q96DZ5 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.29■□□□□ 0.84
CLIP3Q96DZ5 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.29■□□□□ 0.84
CLIP3Q96DZ5 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP3Q96DZ5 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CLIP3Q96DZ5 AL391422.3-201ENST00000603791 2761 ntBASIC20.29■□□□□ 0.84
CLIP3Q96DZ5 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP3Q96DZ5 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.27■□□□□ 0.84
CLIP3Q96DZ5 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.27■□□□□ 0.84
CLIP3Q96DZ5 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLIP3Q96DZ5 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLIP3Q96DZ5 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.27■□□□□ 0.84
CLIP3Q96DZ5 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.27■□□□□ 0.84
CLIP3Q96DZ5 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CLIP3Q96DZ5 AP001160.3-201ENST00000601484 763 ntBASIC20.27■□□□□ 0.84
CLIP3Q96DZ5 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLIP3Q96DZ5 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLIP3Q96DZ5 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CLIP3Q96DZ5 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CLIP3Q96DZ5 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 AP006587.3-201ENST00000525742 1516 ntBASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLIP3Q96DZ5 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 AC006970.2-201ENST00000450065 779 ntBASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 UBE2DNL-204ENST00000602536 740 ntBASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CLIP3Q96DZ5 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 HLA-L-209ENST00000420110 1011 ntBASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms