Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 MIR4787-201ENST00000607364 84 ntBASIC18.82■□□□□ 0.6
CCDC58Q4VC31 AL117332.1-201ENST00000622628 974 ntBASIC18.82■□□□□ 0.6
CCDC58Q4VC31 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 AL451085.2-201ENST00000605085 799 ntBASIC18.81■□□□□ 0.6
CCDC58Q4VC31 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC58Q4VC31 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 AC026471.1-201ENST00000564629 3026 ntBASIC18.8■□□□□ 0.6
CCDC58Q4VC31 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CCDC58Q4VC31 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC58Q4VC31 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC58Q4VC31 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC58Q4VC31 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC58Q4VC31 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC58Q4VC31 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC58Q4VC31 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
CCDC58Q4VC31 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC58Q4VC31 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CCDC58Q4VC31 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC58Q4VC31 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC58Q4VC31 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC58Q4VC31 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC58Q4VC31 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC58Q4VC31 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC58Q4VC31 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC58Q4VC31 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC58Q4VC31 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC58Q4VC31 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC58Q4VC31 AC087239.1-201ENST00000622671 572 ntBASIC18.78■□□□□ 0.6
CCDC58Q4VC31 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC58Q4VC31 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC58Q4VC31 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC58Q4VC31 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC58Q4VC31 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CCDC58Q4VC31 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC58Q4VC31 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC58Q4VC31 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC58Q4VC31 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC58Q4VC31 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC58Q4VC31 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC58Q4VC31 AL157384.1-201ENST00000445995 2473 ntBASIC18.77■□□□□ 0.6
CCDC58Q4VC31 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC58Q4VC31 RBM38-205ENST00000440234 686 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC58Q4VC31 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC58Q4VC31 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC58Q4VC31 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC58Q4VC31 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC58Q4VC31 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC58Q4VC31 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC58Q4VC31 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC58Q4VC31 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC58Q4VC31 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC58Q4VC31 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC58Q4VC31 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms