Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.23■□□□□ 0.83
VSX2P58304 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.23■□□□□ 0.83
VSX2P58304 AC138907.5-202ENST00000569484 235 ntBASIC20.23■□□□□ 0.83
VSX2P58304 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VSX2P58304 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.23■□□□□ 0.83
VSX2P58304 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VSX2P58304 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VSX2P58304 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VSX2P58304 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VSX2P58304 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VSX2P58304 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VSX2P58304 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VSX2P58304 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VSX2P58304 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VSX2P58304 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
VSX2P58304 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VSX2P58304 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VSX2P58304 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.22■□□□□ 0.83
VSX2P58304 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.22■□□□□ 0.83
VSX2P58304 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.22■□□□□ 0.83
VSX2P58304 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VSX2P58304 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VSX2P58304 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VSX2P58304 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VSX2P58304 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VSX2P58304 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.22■□□□□ 0.83
VSX2P58304 EP400NL-214ENST00000641289 2402 ntBASIC20.22■□□□□ 0.83
VSX2P58304 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VSX2P58304 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VSX2P58304 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VSX2P58304 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.21■□□□□ 0.83
VSX2P58304 C11orf96-202ENST00000528572 1834 ntBASIC20.21■□□□□ 0.83
VSX2P58304 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VSX2P58304 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.21■□□□□ 0.83
VSX2P58304 AC006015.1-201ENST00000429970 570 ntBASIC20.21■□□□□ 0.83
VSX2P58304 AC010141.2-201ENST00000452426 721 ntBASIC20.21■□□□□ 0.83
VSX2P58304 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
VSX2P58304 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VSX2P58304 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.21■□□□□ 0.83
VSX2P58304 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
VSX2P58304 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.21■□□□□ 0.83
VSX2P58304 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VSX2P58304 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VSX2P58304 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VSX2P58304 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.21■□□□□ 0.83
VSX2P58304 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
VSX2P58304 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
VSX2P58304 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.21■□□□□ 0.83
VSX2P58304 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VSX2P58304 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
VSX2P58304 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
VSX2P58304 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
VSX2P58304 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
VSX2P58304 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.2■□□□□ 0.82
VSX2P58304 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.2■□□□□ 0.82
VSX2P58304 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
VSX2P58304 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VSX2P58304 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
VSX2P58304 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
VSX2P58304 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VSX2P58304 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VSX2P58304 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VSX2P58304 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.2■□□□□ 0.82
VSX2P58304 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.2■□□□□ 0.82
VSX2P58304 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.2■□□□□ 0.82
VSX2P58304 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.2■□□□□ 0.82
VSX2P58304 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VSX2P58304 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.2■□□□□ 0.82
VSX2P58304 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.2■□□□□ 0.82
VSX2P58304 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VSX2P58304 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
VSX2P58304 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VSX2P58304 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VSX2P58304 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VSX2P58304 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VSX2P58304 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VSX2P58304 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
VSX2P58304 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.19■□□□□ 0.82
VSX2P58304 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
VSX2P58304 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
VSX2P58304 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.19■□□□□ 0.82
VSX2P58304 UBE2DNL-204ENST00000602536 740 ntBASIC20.19■□□□□ 0.82
VSX2P58304 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.19■□□□□ 0.82
VSX2P58304 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
VSX2P58304 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VSX2P58304 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.19■□□□□ 0.82
VSX2P58304 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.19■□□□□ 0.82
VSX2P58304 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VSX2P58304 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VSX2P58304 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
VSX2P58304 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VSX2P58304 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VSX2P58304 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
VSX2P58304 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.18■□□□□ 0.82
VSX2P58304 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VSX2P58304 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VSX2P58304 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VSX2P58304 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VSX2P58304 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VSX2P58304 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms