Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC17.93■□□□□ 0.46
PDLIM4P50479 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC17.93■□□□□ 0.46
PDLIM4P50479 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM4P50479 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM4P50479 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM4P50479 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.92■□□□□ 0.46
PDLIM4P50479 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PDLIM4P50479 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.92■□□□□ 0.46
PDLIM4P50479 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM4P50479 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM4P50479 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM4P50479 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC17.92■□□□□ 0.46
PDLIM4P50479 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM4P50479 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM4P50479 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM4P50479 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM4P50479 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM4P50479 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM4P50479 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM4P50479 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM4P50479 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM4P50479 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM4P50479 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC17.91■□□□□ 0.46
PDLIM4P50479 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM4P50479 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM4P50479 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC17.91■□□□□ 0.46
PDLIM4P50479 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.91■□□□□ 0.46
PDLIM4P50479 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM4P50479 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.91■□□□□ 0.46
PDLIM4P50479 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
PDLIM4P50479 AL050303.2-201ENST00000619798 666 ntBASIC17.91■□□□□ 0.46
PDLIM4P50479 AC010536.3-201ENST00000620306 533 ntBASIC17.91■□□□□ 0.46
PDLIM4P50479 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM4P50479 AP006587.3-201ENST00000525742 1516 ntBASIC17.91■□□□□ 0.46
PDLIM4P50479 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM4P50479 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.91■□□□□ 0.46
PDLIM4P50479 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.91■□□□□ 0.46
PDLIM4P50479 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.9■□□□□ 0.46
PDLIM4P50479 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM4P50479 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM4P50479 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM4P50479 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC17.9■□□□□ 0.46
PDLIM4P50479 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM4P50479 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC17.9■□□□□ 0.46
PDLIM4P50479 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM4P50479 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC17.9■□□□□ 0.46
PDLIM4P50479 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM4P50479 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM4P50479 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PDLIM4P50479 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.9■□□□□ 0.46
PDLIM4P50479 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
PDLIM4P50479 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
PDLIM4P50479 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.9■□□□□ 0.46
PDLIM4P50479 AC053503.5-201ENST00000601508 636 ntBASIC17.9■□□□□ 0.46
PDLIM4P50479 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.9■□□□□ 0.46
PDLIM4P50479 GALC-202ENST00000393568 2054 ntTSL 2 BASIC17.9■□□□□ 0.46
PDLIM4P50479 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
PDLIM4P50479 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM4P50479 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
PDLIM4P50479 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
PDLIM4P50479 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC17.89■□□□□ 0.45
PDLIM4P50479 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
PDLIM4P50479 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PDLIM4P50479 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.89■□□□□ 0.45
PDLIM4P50479 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
PDLIM4P50479 TSPY6P-201ENST00000448518 926 ntBASIC17.89■□□□□ 0.45
PDLIM4P50479 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.89■□□□□ 0.45
PDLIM4P50479 EEF1DP3-203ENST00000566025 782 ntBASIC17.89■□□□□ 0.45
PDLIM4P50479 AC120498.10-201ENST00000621827 505 ntBASIC17.89■□□□□ 0.45
PDLIM4P50479 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
PDLIM4P50479 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PDLIM4P50479 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC17.89■□□□□ 0.45
PDLIM4P50479 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM4P50479 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM4P50479 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM4P50479 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.88■□□□□ 0.45
PDLIM4P50479 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM4P50479 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM4P50479 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM4P50479 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.88■□□□□ 0.45
PDLIM4P50479 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM4P50479 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.88■□□□□ 0.45
PDLIM4P50479 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.88■□□□□ 0.45
PDLIM4P50479 SLC7A5P1-201ENST00000568957 537 ntBASIC17.88■□□□□ 0.45
PDLIM4P50479 AC142086.2-201ENST00000569753 217 ntBASIC17.88■□□□□ 0.45
PDLIM4P50479 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.88■□□□□ 0.45
PDLIM4P50479 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM4P50479 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM4P50479 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
PDLIM4P50479 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM4P50479 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PDLIM4P50479 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC17.87■□□□□ 0.45
PDLIM4P50479 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
PDLIM4P50479 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM4P50479 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.87■□□□□ 0.45
PDLIM4P50479 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.87■□□□□ 0.45
PDLIM4P50479 AF201337.1-201ENST00000520239 748 ntBASIC17.87■□□□□ 0.45
PDLIM4P50479 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.87■□□□□ 0.45
PDLIM4P50479 AC008175.2-201ENST00000612840 297 ntBASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms