Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A2P08572 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A2P08572 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.57■■□□□ 1.04
COL4A2P08572 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A2P08572 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
COL4A2P08572 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
COL4A2P08572 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.57■■□□□ 1.04
COL4A2P08572 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.57■■□□□ 1.04
COL4A2P08572 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.57■■□□□ 1.04
COL4A2P08572 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
COL4A2P08572 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A2P08572 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL4A2P08572 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.57■■□□□ 1.04
COL4A2P08572 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.56■■□□□ 1.04
COL4A2P08572 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL4A2P08572 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
COL4A2P08572 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL4A2P08572 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.56■■□□□ 1.04
COL4A2P08572 AC026366.1-201ENST00000488803 879 ntBASIC21.56■■□□□ 1.04
COL4A2P08572 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.56■■□□□ 1.04
COL4A2P08572 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL4A2P08572 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL4A2P08572 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL4A2P08572 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.56■■□□□ 1.04
COL4A2P08572 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.56■■□□□ 1.04
COL4A2P08572 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.56■■□□□ 1.04
COL4A2P08572 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A2P08572 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.55■■□□□ 1.04
COL4A2P08572 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.55■■□□□ 1.04
COL4A2P08572 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
COL4A2P08572 AL591742.1-201ENST00000604433 565 ntBASIC21.55■■□□□ 1.04
COL4A2P08572 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A2P08572 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A2P08572 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A2P08572 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A2P08572 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A2P08572 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A2P08572 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.55■■□□□ 1.04
COL4A2P08572 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
COL4A2P08572 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A2P08572 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.55■■□□□ 1.04
COL4A2P08572 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
COL4A2P08572 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.55■■□□□ 1.04
COL4A2P08572 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A2P08572 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.55■■□□□ 1.04
COL4A2P08572 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
COL4A2P08572 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL4A2P08572 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL4A2P08572 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.54■■□□□ 1.04
COL4A2P08572 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.54■■□□□ 1.04
COL4A2P08572 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.54■■□□□ 1.04
COL4A2P08572 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.54■■□□□ 1.04
COL4A2P08572 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL4A2P08572 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.54■■□□□ 1.04
COL4A2P08572 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL4A2P08572 AL355472.2-201ENST00000422958 438 ntBASIC21.54■■□□□ 1.04
COL4A2P08572 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
COL4A2P08572 AL158047.1-201ENST00000445918 881 ntBASIC21.54■■□□□ 1.04
COL4A2P08572 AC128676.1-201ENST00000454392 318 ntBASIC21.54■■□□□ 1.04
COL4A2P08572 AC060766.5-201ENST00000590539 871 ntBASIC21.54■■□□□ 1.04
COL4A2P08572 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL4A2P08572 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A2P08572 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A2P08572 AC091799.1-201ENST00000422823 811 ntBASIC21.53■■□□□ 1.04
COL4A2P08572 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.53■■□□□ 1.04
COL4A2P08572 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.53■■□□□ 1.04
COL4A2P08572 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.53■■□□□ 1.04
COL4A2P08572 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.53■■□□□ 1.04
COL4A2P08572 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A2P08572 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
COL4A2P08572 AL596275.1-201ENST00000423464 877 ntBASIC21.52■■□□□ 1.04
COL4A2P08572 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.52■■□□□ 1.04
COL4A2P08572 UNC93B4-201ENST00000505679 747 ntBASIC21.52■■□□□ 1.04
COL4A2P08572 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL4A2P08572 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL4A2P08572 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL4A2P08572 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL4A2P08572 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.52■■□□□ 1.04
COL4A2P08572 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
COL4A2P08572 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL4A2P08572 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.52■■□□□ 1.03
COL4A2P08572 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COL4A2P08572 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
COL4A2P08572 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.52■■□□□ 1.03
COL4A2P08572 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.52■■□□□ 1.03
COL4A2P08572 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COL4A2P08572 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.52■■□□□ 1.03
COL4A2P08572 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COL4A2P08572 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
COL4A2P08572 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A2P08572 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A2P08572 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A2P08572 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.51■■□□□ 1.03
COL4A2P08572 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A2P08572 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A2P08572 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.51■■□□□ 1.03
COL4A2P08572 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A2P08572 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
COL4A2P08572 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.51■■□□□ 1.03
COL4A2P08572 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms