Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.51e-7■■■■■ 172.3
SF3B1O75533 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.51e-7■■■■■ 172.3
SF3B1O75533 CCDC93-203ENST00000437999 850 ntTSL 35.65□□□□□ -1.511e-7■■■■■ 172.3
SF3B1O75533 DNAJB14-210ENST00000474664 960 ntTSL 25.64□□□□□ -1.511e-7■■■■■ 172.3
SF3B1O75533 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.511e-6■■■■■ 172.3
SF3B1O75533 ST3GAL5-206ENST00000455892 530 ntTSL 45.6□□□□□ -1.511e-7■■■■■ 172.3
SF3B1O75533 ELF2-206ENST00000504314 563 ntTSL 35.59□□□□□ -1.511e-7■■■■■ 172.3
SF3B1O75533 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.521e-7■■■■■ 172.3
SF3B1O75533 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.521e-7■■■■■ 172.3
SF3B1O75533 TNRC6A-217ENST00000569376 610 ntTSL 55.5□□□□□ -1.531e-7■■■■■ 172.3
SF3B1O75533 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.532e-6■■■■■ 172.3
SF3B1O75533 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.531e-6■■■■■ 172.3
SF3B1O75533 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.45□□□□□ -1.541e-7■■■■■ 172.3
SF3B1O75533 TOR1AIP1-204ENST00000474875 830 ntTSL 55.45□□□□□ -1.541e-7■■■■■ 172.3
SF3B1O75533 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.42□□□□□ -1.541e-7■■■■■ 172.3
SF3B1O75533 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.42□□□□□ -1.542e-6■■■■■ 172.3
SF3B1O75533 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.541e-7■■■■■ 172.3
SF3B1O75533 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.551e-7■■■■■ 172.3
SF3B1O75533 YIPF1-203ENST00000464950 1602 ntTSL 1 (best)5.35□□□□□ -1.551e-7■■■■■ 172.3
SF3B1O75533 ZBED5-209ENST00000533925 533 ntTSL 45.3□□□□□ -1.562e-6■■■■■ 172.3
SF3B1O75533 MIER3-211ENST00000546593 244 ntTSL 55.18□□□□□ -1.581e-7■■■■■ 172.3
SF3B1O75533 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.581e-7■■■■■ 172.3
SF3B1O75533 DDX24-204ENST00000553451 486 ntTSL 35.12□□□□□ -1.591e-7■■■■■ 172.3
SF3B1O75533 AC009948.1-201ENST00000420672 490 ntTSL 35.1□□□□□ -1.591e-7■■■■■ 172.3
SF3B1O75533 FAM19A2-206ENST00000548541 343 ntTSL 35.04□□□□□ -1.66e-17■■■■■ 172.3
SF3B1O75533 FAF1-203ENST00000472808 759 ntTSL 35.04□□□□□ -1.61e-7■■■■■ 172.3
SF3B1O75533 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.95□□□□□ -1.621e-7■■■■■ 172.3
SF3B1O75533 CWF19L2-202ENST00000431778 2955 ntTSL 1 (best)4.92□□□□□ -1.621e-7■■■■■ 172.3
SF3B1O75533 TMEM14B-217ENST00000489137 374 ntTSL 34.91□□□□□ -1.621e-7■■■■■ 172.3
SF3B1O75533 FAM19A2-212ENST00000550060 387 ntTSL 34.9□□□□□ -1.636e-17■■■■■ 172.3
SF3B1O75533 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.635e-6■■■■■ 172.3
SF3B1O75533 N4BP2L2-209ENST00000503296 2315 ntTSL 24.88□□□□□ -1.631e-7■■■■■ 172.3
SF3B1O75533 BACH1-210ENST00000547141 315 ntTSL 24.83□□□□□ -1.641e-7■■■■■ 172.3
SF3B1O75533 ISCA1-204ENST00000637705 459 ntTSL 54.82□□□□□ -1.641e-7■■■■■ 172.3
SF3B1O75533 ATP8B4-210ENST00000559726 5783 ntTSL 1 (best)4.76□□□□□ -1.651e-7■■■■■ 172.3
SF3B1O75533 CEP128-206ENST00000554502 3774 ntTSL 24.71□□□□□ -1.661e-7■■■■■ 172.3
SF3B1O75533 FAM19A2-202ENST00000500610 1962 ntTSL 24.67□□□□□ -1.666e-17■■■■■ 172.3
SF3B1O75533 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.671e-7■■■■■ 172.3
SF3B1O75533 DECR2-214ENST00000632744 247 ntTSL 54.58□□□□□ -1.681e-7■■■■■ 172.3
SF3B1O75533 CARD8-210ENST00000519302 751 ntTSL 34.53□□□□□ -1.681e-7■■■■■ 172.3
SF3B1O75533 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC4.52□□□□□ -1.691e-7■■■■■ 172.3
SF3B1O75533 FEM1B-204ENST00000570067 579 ntTSL 44.46□□□□□ -1.691e-7■■■■■ 172.3
SF3B1O75533 MFN2-202ENST00000412236 489 ntTSL 34.38□□□□□ -1.711e-7■■■■■ 172.3
SF3B1O75533 PLEKHA5-207ENST00000536974 3139 ntTSL 24.38□□□□□ -1.711e-7■■■■■ 172.3
SF3B1O75533 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.711e-7■■■■■ 172.3
SF3B1O75533 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.711e-7■■■■■ 172.3
SF3B1O75533 TRIP10-213ENST00000601303 311 ntTSL 54.29□□□□□ -1.721e-7■■■■■ 172.3
SF3B1O75533 ATP8B4-216ENST00000560479 2679 ntTSL 24.29□□□□□ -1.721e-7■■■■■ 172.3
SF3B1O75533 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.731e-7■■■■■ 172.3
SF3B1O75533 ZEB1-212ENST00000558655 2773 ntTSL 24.26□□□□□ -1.732e-6■■■■■ 172.3
SF3B1O75533 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.731e-7■■■■■ 172.3
SF3B1O75533 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.731e-7■■■■■ 172.3
SF3B1O75533 ATP8B4-208ENST00000558906 4179 ntTSL 1 (best)4.21□□□□□ -1.741e-7■■■■■ 172.3
SF3B1O75533 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.19□□□□□ -1.741e-7■■■■■ 172.3
SF3B1O75533 GRM7-209ENST00000448328 595 ntTSL 44.19□□□□□ -1.742e-6■■■■■ 172.3
SF3B1O75533 PLEKHA5-212ENST00000538677 557 ntTSL 54.16□□□□□ -1.741e-7■■■■■ 172.3
SF3B1O75533 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.14□□□□□ -1.751e-7■■■■■ 172.3
SF3B1O75533 AC009948.1-202ENST00000454488 563 ntTSL 34.07□□□□□ -1.761e-7■■■■■ 172.3
SF3B1O75533 TOR1AIP1-211ENST00000531726 475 ntTSL 34.04□□□□□ -1.761e-7■■■■■ 172.3
SF3B1O75533 ATP8B4-202ENST00000557955 4124 ntTSL 1 (best)4.01□□□□□ -1.771e-7■■■■■ 172.3
SF3B1O75533 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.771e-7■■■■■ 172.3
SF3B1O75533 GRM7-207ENST00000443259 579 ntTSL 43.95□□□□□ -1.782e-6■■■■■ 172.3
SF3B1O75533 PLCL2-203ENST00000460467 1031 ntTSL 1 (best)3.93□□□□□ -1.781e-7■■■■■ 172.3
SF3B1O75533 DDX10-205ENST00000533198 372 ntTSL 33.9□□□□□ -1.791e-7■■■■■ 172.3
SF3B1O75533 DDX10-207ENST00000534439 438 ntTSL 53.9□□□□□ -1.791e-7■■■■■ 172.3
SF3B1O75533 MRPL19-204ENST00000453233 475 ntTSL 33.86□□□□□ -1.791e-7■■■■■ 172.3
SF3B1O75533 RAD51C-202ENST00000413590 779 ntTSL 23.82□□□□□ -1.81e-7■■■■■ 172.3
SF3B1O75533 MIER3-208ENST00000452157 5240 ntTSL 1 (best)3.77□□□□□ -1.811e-7■■■■■ 172.3
SF3B1O75533 RAD51C-212ENST00000487921 653 ntTSL 33.77□□□□□ -1.811e-7■■■■■ 172.3
SF3B1O75533 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.71□□□□□ -1.821e-7■■■■■ 172.3
SF3B1O75533 TMEM156-201ENST00000344606 949 ntAPPRIS ALT2 TSL 33.69□□□□□ -1.821e-7■■■■■ 172.3
SF3B1O75533 HARS2-203ENST00000502303 543 ntTSL 43.65□□□□□ -1.831e-7■■■■■ 172.3
SF3B1O75533 NBN-210ENST00000523444 593 ntTSL 43.61□□□□□ -1.831e-7■■■■■ 172.3
SF3B1O75533 PLGRKT-202ENST00000472145 396 ntTSL 23.58□□□□□ -1.841e-7■■■■■ 172.3
SF3B1O75533 HMG20A-203ENST00000558176 479 ntTSL 33.53□□□□□ -1.841e-7■■■■■ 172.3
SF3B1O75533 ZBED5-203ENST00000525350 3677 ntTSL 23.51□□□□□ -1.852e-6■■■■■ 172.3
SF3B1O75533 SASH1-202ENST00000367469 591 ntTSL 33.5□□□□□ -1.851e-7■■■■■ 172.3
SF3B1O75533 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC3.5□□□□□ -1.851e-7■■■■■ 172.3
SF3B1O75533 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.47□□□□□ -1.851e-7■■■■■ 172.3
SF3B1O75533 CWF19L2-204ENST00000532251 2383 ntTSL 1 (best)3.42□□□□□ -1.861e-7■■■■■ 172.3
SF3B1O75533 DHFR-204ENST00000508282 545 ntTSL 33.42□□□□□ -1.861e-7■■■■■ 172.3
SF3B1O75533 DNAJB14-207ENST00000469942 6463 ntTSL 23.39□□□□□ -1.871e-7■■■■■ 172.3
SF3B1O75533 CASD1-204ENST00000447923 532 ntTSL 43.39□□□□□ -1.871e-7■■■■■ 172.3
SF3B1O75533 DAAM1-204ENST00000553472 474 ntTSL 23.37□□□□□ -1.871e-7■■■■■ 172.3
SF3B1O75533 N4BP2L2-203ENST00000380121 2807 ntTSL 1 (best)3.32□□□□□ -1.881e-7■■■■■ 172.3
SF3B1O75533 FAM133B-210ENST00000492686 455 ntTSL 53.29□□□□□ -1.881e-7■■■■■ 172.3
SF3B1O75533 BACH1-209ENST00000546469 485 ntTSL 33.19□□□□□ -1.91e-7■■■■■ 172.3
SF3B1O75533 TMEM156-204ENST00000495029 520 ntTSL 53.18□□□□□ -1.91e-7■■■■■ 172.3
SF3B1O75533 BACH1-213ENST00000550131 349 ntTSL 23.17□□□□□ -1.91e-7■■■■■ 172.3
SF3B1O75533 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.911e-7■■■■■ 172.3
SF3B1O75533 ZFP62-206ENST00000509066 542 ntTSL 43.15□□□□□ -1.911e-7■■■■■ 172.3
SF3B1O75533 FAM177A1-210ENST00000555260 912 ntTSL 23.09□□□□□ -1.911e-7■■■■■ 172.3
SF3B1O75533 MIER3-210ENST00000497185 108 ntTSL 53.03□□□□□ -1.921e-7■■■■■ 172.3
SF3B1O75533 AC138409.2-204ENST00000512782 1398 ntTSL 1 (best)3.02□□□□□ -1.935e-6■■■■■ 172.3
SF3B1O75533 TMEM156-202ENST00000372489 550 ntTSL 43□□□□□ -1.931e-7■■■■■ 172.3
SF3B1O75533 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.96□□□□□ -1.941e-7■■■■■ 172.3
SF3B1O75533 PLBD1-202ENST00000540572 553 ntTSL 52.94□□□□□ -1.941e-7■■■■■ 172.3
SF3B1O75533 DAAM1-213ENST00000557628 562 ntTSL 32.91□□□□□ -1.941e-7■■■■■ 172.3
SF3B1O75533 HMG20A-205ENST00000558651 494 ntTSL 42.9□□□□□ -1.951e-7■■■■■ 172.3
SF3B1O75533 LGALS8-224ENST00000528782 572 ntTSL 42.84□□□□□ -1.961e-7■■■■■ 172.3
Retrieved 100 of 46,956 protein–RNA pairs in 2101.3 ms