Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A3BPQ9Y5P4 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A3BPQ9Y5P4 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A3BPQ9Y5P4 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC23.76■■□□□ 1.39
COL4A3BPQ9Y5P4 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC23.76■■□□□ 1.39
COL4A3BPQ9Y5P4 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A3BPQ9Y5P4 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A3BPQ9Y5P4 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A3BPQ9Y5P4 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
COL4A3BPQ9Y5P4 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL4A3BPQ9Y5P4 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC23.76■■□□□ 1.39
COL4A3BPQ9Y5P4 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A3BPQ9Y5P4 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC23.75■■□□□ 1.39
COL4A3BPQ9Y5P4 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A3BPQ9Y5P4 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC23.75■■□□□ 1.39
COL4A3BPQ9Y5P4 AL137784.2-201ENST00000607332 1000 ntBASIC23.75■■□□□ 1.39
COL4A3BPQ9Y5P4 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A3BPQ9Y5P4 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A3BPQ9Y5P4 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A3BPQ9Y5P4 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL4A3BPQ9Y5P4 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
COL4A3BPQ9Y5P4 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC23.75■■□□□ 1.39
COL4A3BPQ9Y5P4 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A3BPQ9Y5P4 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A3BPQ9Y5P4 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A3BPQ9Y5P4 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A3BPQ9Y5P4 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC23.74■■□□□ 1.39
COL4A3BPQ9Y5P4 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC23.74■■□□□ 1.39
COL4A3BPQ9Y5P4 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A3BPQ9Y5P4 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC23.74■■□□□ 1.39
COL4A3BPQ9Y5P4 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A3BPQ9Y5P4 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
COL4A3BPQ9Y5P4 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A3BPQ9Y5P4 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL4A3BPQ9Y5P4 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 ME3-201ENST00000323418 1068 ntTSL 5 BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 AC055733.4-201ENST00000638462 1354 ntBASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.73■■□□□ 1.39
COL4A3BPQ9Y5P4 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC23.72■■□□□ 1.39
COL4A3BPQ9Y5P4 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A3BPQ9Y5P4 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A3BPQ9Y5P4 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC23.72■■□□□ 1.39
COL4A3BPQ9Y5P4 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC23.72■■□□□ 1.39
COL4A3BPQ9Y5P4 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23.72■■□□□ 1.39
COL4A3BPQ9Y5P4 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A3BPQ9Y5P4 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A3BPQ9Y5P4 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL4A3BPQ9Y5P4 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL4A3BPQ9Y5P4 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL4A3BPQ9Y5P4 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL4A3BPQ9Y5P4 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC23.71■■□□□ 1.39
COL4A3BPQ9Y5P4 AC010542.4-201ENST00000563151 1910 ntBASIC23.71■■□□□ 1.39
COL4A3BPQ9Y5P4 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL4A3BPQ9Y5P4 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC23.71■■□□□ 1.39
COL4A3BPQ9Y5P4 TESC-206ENST00000541210 936 ntTSL 3 BASIC23.71■■□□□ 1.39
COL4A3BPQ9Y5P4 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC23.71■■□□□ 1.39
COL4A3BPQ9Y5P4 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC23.71■■□□□ 1.39
COL4A3BPQ9Y5P4 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
COL4A3BPQ9Y5P4 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL4A3BPQ9Y5P4 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC23.71■■□□□ 1.39
COL4A3BPQ9Y5P4 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC23.71■■□□□ 1.39
COL4A3BPQ9Y5P4 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC23.7■■□□□ 1.39
COL4A3BPQ9Y5P4 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
COL4A3BPQ9Y5P4 AP006587.3-201ENST00000525742 1516 ntBASIC23.7■■□□□ 1.38
COL4A3BPQ9Y5P4 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A3BPQ9Y5P4 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC23.7■■□□□ 1.38
COL4A3BPQ9Y5P4 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A3BPQ9Y5P4 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A3BPQ9Y5P4 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A3BPQ9Y5P4 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC23.7■■□□□ 1.38
COL4A3BPQ9Y5P4 AC004911.1-201ENST00000416316 871 ntBASIC23.7■■□□□ 1.38
COL4A3BPQ9Y5P4 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A3BPQ9Y5P4 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A3BPQ9Y5P4 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A3BPQ9Y5P4 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A3BPQ9Y5P4 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL4A3BPQ9Y5P4 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC23.7■■□□□ 1.38
COL4A3BPQ9Y5P4 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
COL4A3BPQ9Y5P4 KRT87P-202ENST00000534226 1464 ntBASIC23.69■■□□□ 1.38
COL4A3BPQ9Y5P4 AC026471.6-201ENST00000622954 1905 ntBASIC23.69■■□□□ 1.38
COL4A3BPQ9Y5P4 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL4A3BPQ9Y5P4 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC23.69■■□□□ 1.38
COL4A3BPQ9Y5P4 KRT19P1-201ENST00000405746 1186 ntBASIC23.69■■□□□ 1.38
COL4A3BPQ9Y5P4 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC23.69■■□□□ 1.38
COL4A3BPQ9Y5P4 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC23.69■■□□□ 1.38
COL4A3BPQ9Y5P4 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
COL4A3BPQ9Y5P4 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms