Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC24.34■■□□□ 1.49
DDX41Q9UJV9 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
DDX41Q9UJV9 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC24.34■■□□□ 1.49
DDX41Q9UJV9 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC24.33■■□□□ 1.49
DDX41Q9UJV9 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC24.33■■□□□ 1.49
DDX41Q9UJV9 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC24.33■■□□□ 1.49
DDX41Q9UJV9 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC24.33■■□□□ 1.49
DDX41Q9UJV9 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
DDX41Q9UJV9 KRT87P-202ENST00000534226 1464 ntBASIC24.33■■□□□ 1.49
DDX41Q9UJV9 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
DDX41Q9UJV9 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC24.33■■□□□ 1.49
DDX41Q9UJV9 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
DDX41Q9UJV9 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
DDX41Q9UJV9 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC24.33■■□□□ 1.49
DDX41Q9UJV9 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
DDX41Q9UJV9 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
DDX41Q9UJV9 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC24.33■■□□□ 1.49
DDX41Q9UJV9 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC24.33■■□□□ 1.48
DDX41Q9UJV9 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
DDX41Q9UJV9 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
DDX41Q9UJV9 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC24.32■■□□□ 1.48
DDX41Q9UJV9 AC055733.4-201ENST00000638462 1354 ntBASIC24.32■■□□□ 1.48
DDX41Q9UJV9 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX41Q9UJV9 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
DDX41Q9UJV9 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX41Q9UJV9 TK2-208ENST00000545043 1120 ntTSL 2 BASIC24.32■■□□□ 1.48
DDX41Q9UJV9 AC104187.1-201ENST00000607510 612 ntBASIC24.32■■□□□ 1.48
DDX41Q9UJV9 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
DDX41Q9UJV9 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
DDX41Q9UJV9 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
DDX41Q9UJV9 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
DDX41Q9UJV9 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
DDX41Q9UJV9 KRT18P11-201ENST00000435214 1283 ntBASIC24.31■■□□□ 1.48
DDX41Q9UJV9 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC24.31■■□□□ 1.48
DDX41Q9UJV9 SPI1-203ENST00000533030 661 ntTSL 2 BASIC24.31■■□□□ 1.48
DDX41Q9UJV9 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC24.31■■□□□ 1.48
DDX41Q9UJV9 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC24.31■■□□□ 1.48
DDX41Q9UJV9 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC24.31■■□□□ 1.48
DDX41Q9UJV9 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC24.31■■□□□ 1.48
DDX41Q9UJV9 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
DDX41Q9UJV9 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
DDX41Q9UJV9 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
DDX41Q9UJV9 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC24.31■■□□□ 1.48
DDX41Q9UJV9 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
DDX41Q9UJV9 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC24.3■■□□□ 1.48
DDX41Q9UJV9 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
DDX41Q9UJV9 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
DDX41Q9UJV9 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
DDX41Q9UJV9 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC24.3■■□□□ 1.48
DDX41Q9UJV9 AC026185.1-201ENST00000445748 174 ntBASIC24.3■■□□□ 1.48
DDX41Q9UJV9 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC24.3■■□□□ 1.48
DDX41Q9UJV9 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC24.3■■□□□ 1.48
DDX41Q9UJV9 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC24.3■■□□□ 1.48
DDX41Q9UJV9 AC011767.1-201ENST00000617410 1153 ntBASIC24.3■■□□□ 1.48
DDX41Q9UJV9 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC24.3■■□□□ 1.48
DDX41Q9UJV9 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
DDX41Q9UJV9 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
DDX41Q9UJV9 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
DDX41Q9UJV9 HLA-L-209ENST00000420110 1011 ntBASIC24.29■■□□□ 1.48
DDX41Q9UJV9 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
DDX41Q9UJV9 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
DDX41Q9UJV9 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC24.29■■□□□ 1.48
DDX41Q9UJV9 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
DDX41Q9UJV9 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
DDX41Q9UJV9 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
DDX41Q9UJV9 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
DDX41Q9UJV9 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
DDX41Q9UJV9 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
DDX41Q9UJV9 AP004607.7-201ENST00000527152 1677 ntBASIC24.27■■□□□ 1.48
DDX41Q9UJV9 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
DDX41Q9UJV9 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC24.27■■□□□ 1.48
DDX41Q9UJV9 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
DDX41Q9UJV9 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC24.27■■□□□ 1.48
DDX41Q9UJV9 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
DDX41Q9UJV9 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
DDX41Q9UJV9 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC24.27■■□□□ 1.48
DDX41Q9UJV9 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
DDX41Q9UJV9 GCA-201ENST00000233612 1694 ntTSL 2 BASIC24.27■■□□□ 1.48
DDX41Q9UJV9 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 MFF-207ENST00000409565 1548 ntTSL 2 BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC24.26■■□□□ 1.47
DDX41Q9UJV9 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms