Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC35.78■■■■□ 3.32
IFT140Q96RY7 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
IFT140Q96RY7 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC35.78■■■■□ 3.32
IFT140Q96RY7 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC35.78■■■■□ 3.32
IFT140Q96RY7 PNMA6B-201ENST00000538162 1200 ntBASIC35.78■■■■□ 3.32
IFT140Q96RY7 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC35.78■■■■□ 3.32
IFT140Q96RY7 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC35.78■■■■□ 3.32
IFT140Q96RY7 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
IFT140Q96RY7 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC35.77■■■■□ 3.32
IFT140Q96RY7 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC35.77■■■■□ 3.32
IFT140Q96RY7 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC35.77■■■■□ 3.32
IFT140Q96RY7 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
IFT140Q96RY7 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
IFT140Q96RY7 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC35.77■■■■□ 3.32
IFT140Q96RY7 SPIB-206ENST00000596074 847 ntTSL 2 BASIC35.77■■■■□ 3.32
IFT140Q96RY7 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC35.77■■■■□ 3.32
IFT140Q96RY7 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.32
IFT140Q96RY7 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC35.76■■■■□ 3.32
IFT140Q96RY7 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC35.76■■■■□ 3.32
IFT140Q96RY7 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.32
IFT140Q96RY7 AC138932.3-201ENST00000567634 1902 ntBASIC35.76■■■■□ 3.32
IFT140Q96RY7 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC35.76■■■■□ 3.31
IFT140Q96RY7 AL139125.2-201ENST00000623134 1869 ntBASIC35.76■■■■□ 3.31
IFT140Q96RY7 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
IFT140Q96RY7 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC35.75■■■■□ 3.31
IFT140Q96RY7 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC35.75■■■■□ 3.31
IFT140Q96RY7 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC35.75■■■■□ 3.31
IFT140Q96RY7 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC35.74■■■■□ 3.31
IFT140Q96RY7 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC35.74■■■■□ 3.31
IFT140Q96RY7 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC35.74■■■■□ 3.31
IFT140Q96RY7 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC35.74■■■■□ 3.31
IFT140Q96RY7 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC35.74■■■■□ 3.31
IFT140Q96RY7 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC35.73■■■■□ 3.31
IFT140Q96RY7 ABHD17AP6-201ENST00000458502 1044 ntBASIC35.73■■■■□ 3.31
IFT140Q96RY7 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC35.73■■■■□ 3.31
IFT140Q96RY7 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC35.73■■■■□ 3.31
IFT140Q96RY7 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC35.73■■■■□ 3.31
IFT140Q96RY7 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
IFT140Q96RY7 RNF146-206ENST00000480444 843 ntTSL 2 BASIC35.73■■■■□ 3.31
IFT140Q96RY7 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC35.73■■■■□ 3.31
IFT140Q96RY7 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC35.73■■■■□ 3.31
IFT140Q96RY7 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC35.73■■■■□ 3.31
IFT140Q96RY7 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
IFT140Q96RY7 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC35.72■■■■□ 3.31
IFT140Q96RY7 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC35.72■■■■□ 3.31
IFT140Q96RY7 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC35.72■■■■□ 3.31
IFT140Q96RY7 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC35.72■■■■□ 3.31
IFT140Q96RY7 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC35.72■■■■□ 3.31
IFT140Q96RY7 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC35.72■■■■□ 3.31
IFT140Q96RY7 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC35.71■■■■□ 3.31
IFT140Q96RY7 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC35.71■■■■□ 3.31
IFT140Q96RY7 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
IFT140Q96RY7 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC35.71■■■■□ 3.31
IFT140Q96RY7 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
IFT140Q96RY7 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC35.71■■■■□ 3.31
IFT140Q96RY7 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC35.71■■■■□ 3.31
IFT140Q96RY7 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC35.71■■■■□ 3.31
IFT140Q96RY7 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC35.71■■■■□ 3.31
IFT140Q96RY7 AC142381.3-201ENST00000568208 1670 ntBASIC35.71■■■■□ 3.31
IFT140Q96RY7 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC35.7■■■■□ 3.31
IFT140Q96RY7 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC35.7■■■■□ 3.31
IFT140Q96RY7 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC35.7■■■■□ 3.31
IFT140Q96RY7 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC35.7■■■■□ 3.31
IFT140Q96RY7 AC233702.5-201ENST00000584107 538 ntBASIC35.7■■■■□ 3.31
IFT140Q96RY7 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
IFT140Q96RY7 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.3
IFT140Q96RY7 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC35.69■■■■□ 3.3
IFT140Q96RY7 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC35.69■■■■□ 3.3
IFT140Q96RY7 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC35.69■■■■□ 3.3
IFT140Q96RY7 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC35.69■■■■□ 3.3
IFT140Q96RY7 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC35.69■■■■□ 3.3
IFT140Q96RY7 KRT17P3-201ENST00000420566 1262 ntBASIC35.69■■■■□ 3.3
IFT140Q96RY7 AL355472.2-201ENST00000422958 438 ntBASIC35.69■■■■□ 3.3
IFT140Q96RY7 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC35.69■■■■□ 3.3
IFT140Q96RY7 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC35.69■■■■□ 3.3
IFT140Q96RY7 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC35.69■■■■□ 3.3
IFT140Q96RY7 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC35.69■■■■□ 3.3
IFT140Q96RY7 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC35.68■■■■□ 3.3
IFT140Q96RY7 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC35.68■■■■□ 3.3
IFT140Q96RY7 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
IFT140Q96RY7 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC35.68■■■■□ 3.3
IFT140Q96RY7 OR7E47P-201ENST00000546390 1422 ntBASIC35.68■■■■□ 3.3
IFT140Q96RY7 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
IFT140Q96RY7 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC35.67■■■■□ 3.3
IFT140Q96RY7 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC35.67■■■■□ 3.3
IFT140Q96RY7 RCN1P1-201ENST00000400413 996 ntBASIC35.67■■■■□ 3.3
IFT140Q96RY7 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC35.67■■■■□ 3.3
IFT140Q96RY7 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC35.67■■■■□ 3.3
IFT140Q96RY7 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC35.67■■■■□ 3.3
IFT140Q96RY7 AC012306.2-201ENST00000609350 630 ntBASIC35.67■■■■□ 3.3
IFT140Q96RY7 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC35.67■■■■□ 3.3
IFT140Q96RY7 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC35.67■■■■□ 3.3
IFT140Q96RY7 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC35.67■■■■□ 3.3
IFT140Q96RY7 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC35.67■■■■□ 3.3
IFT140Q96RY7 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC35.67■■■■□ 3.3
IFT140Q96RY7 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC35.67■■■■□ 3.3
IFT140Q96RY7 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC35.67■■■■□ 3.3
IFT140Q96RY7 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC35.67■■■■□ 3.3
IFT140Q96RY7 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC35.67■■■■□ 3.3
IFT140Q96RY7 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC35.67■■■■□ 3.3
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms