Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
LRCH3Q96II8 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LRCH3Q96II8 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC23.12■■□□□ 1.29
LRCH3Q96II8 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC23.12■■□□□ 1.29
LRCH3Q96II8 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC23.12■■□□□ 1.29
LRCH3Q96II8 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC23.12■■□□□ 1.29
LRCH3Q96II8 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.12■■□□□ 1.29
LRCH3Q96II8 AC055733.4-201ENST00000638462 1354 ntBASIC23.12■■□□□ 1.29
LRCH3Q96II8 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC23.11■■□□□ 1.29
LRCH3Q96II8 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
LRCH3Q96II8 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
LRCH3Q96II8 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
LRCH3Q96II8 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC23.11■■□□□ 1.29
LRCH3Q96II8 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC23.11■■□□□ 1.29
LRCH3Q96II8 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC23.11■■□□□ 1.29
LRCH3Q96II8 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC23.11■■□□□ 1.29
LRCH3Q96II8 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC23.11■■□□□ 1.29
LRCH3Q96II8 PRKY-204ENST00000533551 1019 ntBASIC23.11■■□□□ 1.29
LRCH3Q96II8 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC23.11■■□□□ 1.29
LRCH3Q96II8 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
LRCH3Q96II8 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
LRCH3Q96II8 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LRCH3Q96II8 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
LRCH3Q96II8 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC23.1■■□□□ 1.29
LRCH3Q96II8 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LRCH3Q96II8 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
LRCH3Q96II8 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC23.1■■□□□ 1.29
LRCH3Q96II8 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LRCH3Q96II8 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LRCH3Q96II8 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LRCH3Q96II8 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LRCH3Q96II8 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
LRCH3Q96II8 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC23.1■■□□□ 1.29
LRCH3Q96II8 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
LRCH3Q96II8 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
LRCH3Q96II8 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.1■■□□□ 1.29
LRCH3Q96II8 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LRCH3Q96II8 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC23.1■■□□□ 1.29
LRCH3Q96II8 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC23.1■■□□□ 1.29
LRCH3Q96II8 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
LRCH3Q96II8 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC23.09■■□□□ 1.29
LRCH3Q96II8 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC23.09■■□□□ 1.29
LRCH3Q96II8 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
LRCH3Q96II8 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC23.09■■□□□ 1.29
LRCH3Q96II8 BRWD1-AS2-201ENST00000603064 1028 ntBASIC23.09■■□□□ 1.29
LRCH3Q96II8 CD177P1-201ENST00000606252 935 ntBASIC23.09■■□□□ 1.29
LRCH3Q96II8 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC23.09■■□□□ 1.29
LRCH3Q96II8 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
LRCH3Q96II8 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
LRCH3Q96II8 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
LRCH3Q96II8 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
LRCH3Q96II8 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
LRCH3Q96II8 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
LRCH3Q96II8 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
LRCH3Q96II8 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
LRCH3Q96II8 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
LRCH3Q96II8 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
LRCH3Q96II8 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
LRCH3Q96II8 POU5F1P4-201ENST00000413175 1085 ntBASIC23.08■■□□□ 1.29
LRCH3Q96II8 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC23.08■■□□□ 1.29
LRCH3Q96II8 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
LRCH3Q96II8 AC233702.5-201ENST00000584107 538 ntBASIC23.08■■□□□ 1.29
LRCH3Q96II8 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23.08■■□□□ 1.29
LRCH3Q96II8 AL139125.2-201ENST00000623134 1869 ntBASIC23.08■■□□□ 1.29
LRCH3Q96II8 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.08■■□□□ 1.29
LRCH3Q96II8 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.08■■□□□ 1.28
LRCH3Q96II8 DUSP8P5-201ENST00000422884 1815 ntBASIC23.08■■□□□ 1.28
LRCH3Q96II8 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.08■■□□□ 1.28
LRCH3Q96II8 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LRCH3Q96II8 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC23.07■■□□□ 1.28
LRCH3Q96II8 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LRCH3Q96II8 KRT17P3-201ENST00000420566 1262 ntBASIC23.07■■□□□ 1.28
LRCH3Q96II8 AC012618.2-201ENST00000428058 849 ntBASIC23.07■■□□□ 1.28
LRCH3Q96II8 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC23.07■■□□□ 1.28
LRCH3Q96II8 TPM1-226ENST00000560959 925 ntTSL 2 BASIC23.07■■□□□ 1.28
LRCH3Q96II8 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC23.07■■□□□ 1.28
LRCH3Q96II8 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC23.07■■□□□ 1.28
LRCH3Q96II8 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
LRCH3Q96II8 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LRCH3Q96II8 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
LRCH3Q96II8 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LRCH3Q96II8 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LRCH3Q96II8 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LRCH3Q96II8 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
LRCH3Q96II8 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
LRCH3Q96II8 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LRCH3Q96II8 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LRCH3Q96II8 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LRCH3Q96II8 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
LRCH3Q96II8 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
LRCH3Q96II8 AL049597.2-201ENST00000565575 961 ntBASIC23.06■■□□□ 1.28
LRCH3Q96II8 AC060766.5-201ENST00000590539 871 ntBASIC23.06■■□□□ 1.28
LRCH3Q96II8 AL590326.2-201ENST00000625139 305 ntBASIC23.06■■□□□ 1.28
LRCH3Q96II8 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
LRCH3Q96II8 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LRCH3Q96II8 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LRCH3Q96II8 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
LRCH3Q96II8 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC23.05■■□□□ 1.28
LRCH3Q96II8 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LRCH3Q96II8 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms