Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC27.76■■■□□ 2.03
RTF1Q92541 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC27.76■■■□□ 2.03
RTF1Q92541 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
RTF1Q92541 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC27.76■■■□□ 2.03
RTF1Q92541 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
RTF1Q92541 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC27.75■■■□□ 2.03
RTF1Q92541 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
RTF1Q92541 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC27.75■■■□□ 2.03
RTF1Q92541 MIR663A-201ENST00000385250 93 ntBASIC27.75■■■□□ 2.03
RTF1Q92541 AC007322.1-201ENST00000426983 750 ntBASIC27.75■■■□□ 2.03
RTF1Q92541 SLC7A5P1-201ENST00000568957 537 ntBASIC27.75■■■□□ 2.03
RTF1Q92541 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC27.75■■■□□ 2.03
RTF1Q92541 MAZ-216ENST00000616501 991 ntTSL 5 BASIC27.75■■■□□ 2.03
RTF1Q92541 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC27.75■■■□□ 2.03
RTF1Q92541 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC27.75■■■□□ 2.03
RTF1Q92541 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
RTF1Q92541 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC27.75■■■□□ 2.03
RTF1Q92541 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC27.75■■■□□ 2.03
RTF1Q92541 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC27.75■■■□□ 2.03
RTF1Q92541 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
RTF1Q92541 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC27.75■■■□□ 2.03
RTF1Q92541 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
RTF1Q92541 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
RTF1Q92541 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC27.74■■■□□ 2.03
RTF1Q92541 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
RTF1Q92541 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC27.74■■■□□ 2.03
RTF1Q92541 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
RTF1Q92541 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC27.74■■■□□ 2.03
RTF1Q92541 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC27.74■■■□□ 2.03
RTF1Q92541 AC010536.3-201ENST00000620306 533 ntBASIC27.74■■■□□ 2.03
RTF1Q92541 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
RTF1Q92541 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
RTF1Q92541 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
RTF1Q92541 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
RTF1Q92541 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
RTF1Q92541 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
RTF1Q92541 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
RTF1Q92541 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
RTF1Q92541 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
RTF1Q92541 TERT-206ENST00000508104 2486 ntTSL 5 BASIC27.73■■■□□ 2.03
RTF1Q92541 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
RTF1Q92541 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
RTF1Q92541 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
RTF1Q92541 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC27.73■■■□□ 2.03
RTF1Q92541 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC27.73■■■□□ 2.03
RTF1Q92541 MAP2K4P1-201ENST00000438453 1195 ntBASIC27.73■■■□□ 2.03
RTF1Q92541 AC120498.10-201ENST00000621827 505 ntBASIC27.73■■■□□ 2.03
RTF1Q92541 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
RTF1Q92541 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
RTF1Q92541 RARG-204ENST00000543726 1779 ntTSL 2 BASIC27.73■■■□□ 2.03
RTF1Q92541 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
RTF1Q92541 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
RTF1Q92541 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC27.72■■■□□ 2.03
RTF1Q92541 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
RTF1Q92541 POU5F1P4-201ENST00000413175 1085 ntBASIC27.72■■■□□ 2.03
RTF1Q92541 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
RTF1Q92541 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC27.72■■■□□ 2.03
RTF1Q92541 AC026471.6-201ENST00000622954 1905 ntBASIC27.72■■■□□ 2.03
RTF1Q92541 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
RTF1Q92541 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC27.72■■■□□ 2.03
RTF1Q92541 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC27.72■■■□□ 2.03
RTF1Q92541 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC27.71■■■□□ 2.03
RTF1Q92541 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC27.71■■■□□ 2.03
RTF1Q92541 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC27.71■■■□□ 2.03
RTF1Q92541 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
RTF1Q92541 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC27.71■■■□□ 2.03
RTF1Q92541 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC27.71■■■□□ 2.03
RTF1Q92541 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC27.71■■■□□ 2.03
RTF1Q92541 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC27.71■■■□□ 2.03
RTF1Q92541 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC27.7■■■□□ 2.03
RTF1Q92541 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC27.7■■■□□ 2.03
RTF1Q92541 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
RTF1Q92541 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC27.7■■■□□ 2.02
RTF1Q92541 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC27.7■■■□□ 2.02
RTF1Q92541 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC27.7■■■□□ 2.02
RTF1Q92541 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC27.7■■■□□ 2.02
RTF1Q92541 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC27.7■■■□□ 2.02
RTF1Q92541 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
RTF1Q92541 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC27.7■■■□□ 2.02
RTF1Q92541 PARP1-210ENST00000629232 477 ntTSL 5 BASIC27.7■■■□□ 2.02
RTF1Q92541 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.02
RTF1Q92541 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
RTF1Q92541 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
RTF1Q92541 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC27.69■■■□□ 2.02
RTF1Q92541 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC27.69■■■□□ 2.02
RTF1Q92541 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
RTF1Q92541 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
RTF1Q92541 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
RTF1Q92541 NCF1B-203ENST00000435988 1254 ntBASIC27.69■■■□□ 2.02
RTF1Q92541 AC005181.1-201ENST00000604782 1256 ntBASIC27.69■■■□□ 2.02
RTF1Q92541 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
RTF1Q92541 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
RTF1Q92541 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC27.69■■■□□ 2.02
RTF1Q92541 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
RTF1Q92541 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
RTF1Q92541 FAM99A-202ENST00000538190 1989 ntBASIC27.68■■■□□ 2.02
RTF1Q92541 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC27.68■■■□□ 2.02
RTF1Q92541 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC27.68■■■□□ 2.02
RTF1Q92541 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC27.68■■■□□ 2.02
RTF1Q92541 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC27.68■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms