Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.38■□□□□ 0.851e-17■■■□□ 16.1
DDX55Q8NHQ9 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.36■□□□□ 0.851e-7■■■□□ 16.1
DDX55Q8NHQ9 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.784e-9■■■□□ 16.1
DDX55Q8NHQ9 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC19.91■□□□□ 0.783e-6■■■□□ 16.1
DDX55Q8NHQ9 MIR210HG-202ENST00000528245 659 ntTSL 319.89■□□□□ 0.773e-6■■■□□ 16.1
DDX55Q8NHQ9 KIF22-205ENST00000563666 1603 ntTSL 519.65■□□□□ 0.743e-6■■■□□ 16.1
DDX55Q8NHQ9 CCDC61-208ENST00000601763 291 ntTSL 319.53■□□□□ 0.723e-6■■■□□ 16.1
DDX55Q8NHQ9 SLC29A2-204ENST00000541567 2272 ntTSL 1 (best)19.2■□□□□ 0.661e-7■■■□□ 16.1
DDX55Q8NHQ9 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.06■□□□□ 0.641e-17■■■□□ 16.1
DDX55Q8NHQ9 NOSIP-212ENST00000599537 833 ntTSL 518.76■□□□□ 0.593e-6■■■□□ 16.1
DDX55Q8NHQ9 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.581e-7■■■□□ 16.1
DDX55Q8NHQ9 TSPAN14-201ENST00000265450 2588 ntTSL 218.63■□□□□ 0.573e-11■■■□□ 16.1
DDX55Q8NHQ9 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.573e-6■■■□□ 16.1
DDX55Q8NHQ9 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.564e-11■■■□□ 16.1
DDX55Q8NHQ9 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.553e-6■■■□□ 16.1
DDX55Q8NHQ9 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC18.36■□□□□ 0.534e-9■■■□□ 16.1
DDX55Q8NHQ9 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.18■□□□□ 0.53e-6■■■□□ 16.1
DDX55Q8NHQ9 LMBR1L-220ENST00000551272 472 ntTSL 218.15■□□□□ 0.53e-6■■■□□ 16.1
DDX55Q8NHQ9 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.491e-7■■■□□ 16.1
DDX55Q8NHQ9 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.491e-7■■■□□ 16.1
DDX55Q8NHQ9 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.483e-6■■■□□ 16.1
DDX55Q8NHQ9 USP21-208ENST00000487163 2514 ntTSL 1 (best)17.96■□□□□ 0.473e-6■■■□□ 16.1
DDX55Q8NHQ9 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.393e-6■■■□□ 16.1
DDX55Q8NHQ9 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.393e-6■■■□□ 16.1
DDX55Q8NHQ9 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.394e-11■■■□□ 16.1
DDX55Q8NHQ9 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.37■□□□□ 0.371e-7■■■□□ 16.1
DDX55Q8NHQ9 RELA-220ENST00000532999 1341 ntTSL 517.28■□□□□ 0.365e-20■■■□□ 16.1
DDX55Q8NHQ9 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.15■□□□□ 0.343e-6■■■□□ 16.1
DDX55Q8NHQ9 FAM129B-206ENST00000478917 362 ntTSL 517.08■□□□□ 0.323e-6■■■□□ 16.1
DDX55Q8NHQ9 SLC29A2-203ENST00000540386 2474 ntTSL 1 (best)17.05■□□□□ 0.321e-7■■■□□ 16.1
DDX55Q8NHQ9 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.323e-6■■■□□ 16.1
DDX55Q8NHQ9 GLOD4-211ENST00000575790 853 ntTSL 516.97■□□□□ 0.313e-6■■■□□ 16.1
DDX55Q8NHQ9 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.313e-6■■■□□ 16.1
DDX55Q8NHQ9 EGLN2-213ENST00000596517 574 ntTSL 416.78■□□□□ 0.283e-6■■■□□ 16.1
DDX55Q8NHQ9 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC16.73■□□□□ 0.273e-6■■■□□ 16.1
DDX55Q8NHQ9 NOSIP-206ENST00000598296 529 ntTSL 316.65■□□□□ 0.263e-6■■■□□ 16.1
DDX55Q8NHQ9 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.213e-6■■■□□ 16.1
DDX55Q8NHQ9 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.216e-7■■■□□ 16.1
DDX55Q8NHQ9 NOSIP-203ENST00000594932 602 ntTSL 516.16■□□□□ 0.183e-6■■■□□ 16.1
DDX55Q8NHQ9 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.173e-6■■■□□ 16.1
DDX55Q8NHQ9 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.166e-7■■■□□ 16.1
DDX55Q8NHQ9 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.05■□□□□ 0.163e-6■■■□□ 16.1
DDX55Q8NHQ9 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.97■□□□□ 0.153e-11■■■□□ 16.1
DDX55Q8NHQ9 NIT1-211ENST00000485594 1037 ntTSL 515.85■□□□□ 0.133e-6■■■□□ 16.1
DDX55Q8NHQ9 GLOD4-208ENST00000574554 1314 ntTSL 215.56■□□□□ 0.083e-6■■■□□ 16.1
DDX55Q8NHQ9 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.086e-7■■■□□ 16.1
DDX55Q8NHQ9 JPT2-214ENST00000569765 782 ntTSL 2 BASIC15.53■□□□□ 0.082e-8■■■□□ 16.1
DDX55Q8NHQ9 RELA-208ENST00000526283 2004 ntTSL 515.53■□□□□ 0.081e-17■■■□□ 16.1
DDX55Q8NHQ9 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC15.4■□□□□ 0.063e-6■■■□□ 16.1
DDX55Q8NHQ9 GLOD4-217ENST00000576750 558 ntTSL 415.39■□□□□ 0.053e-6■■■□□ 16.1
DDX55Q8NHQ9 CCDC124-202ENST00000596123 580 ntTSL 215.34■□□□□ 0.051e-8■■■□□ 16.1
DDX55Q8NHQ9 JPT2-203ENST00000382711 894 ntTSL 4 BASIC15.26■□□□□ 0.032e-8■■■□□ 16.1
DDX55Q8NHQ9 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC15.17■□□□□ 0.021e-8■■■□□ 16.1
DDX55Q8NHQ9 LMBR1L-218ENST00000551143 578 ntTSL 314.96□□□□□ -0.013e-6■■■□□ 16.1
DDX55Q8NHQ9 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC14.77□□□□□ -0.053e-6■■■□□ 16.1
DDX55Q8NHQ9 JPT2-202ENST00000382710 962 ntTSL 2 BASIC14.5□□□□□ -0.092e-8■■■□□ 16.1
DDX55Q8NHQ9 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.133e-6■■■□□ 16.1
DDX55Q8NHQ9 JPT2-207ENST00000565851 565 ntTSL 1 (best)14.17□□□□□ -0.143e-6■■■□□ 16.1
DDX55Q8NHQ9 JPT2-208ENST00000566691 601 ntTSL 514.15□□□□□ -0.143e-6■■■□□ 16.1
DDX55Q8NHQ9 USP21-210ENST00000493054 770 ntTSL 514.06□□□□□ -0.163e-6■■■□□ 16.1
DDX55Q8NHQ9 JPT2-206ENST00000562684 3185 ntTSL 2 BASIC13.87□□□□□ -0.192e-8■■■□□ 16.1
DDX55Q8NHQ9 AL031708.1-201ENST00000454337 5326 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.213e-6■■■□□ 16.1
DDX55Q8NHQ9 COG4-205ENST00000526700 1978 ntTSL 513.6□□□□□ -0.233e-6■■■□□ 16.1
DDX55Q8NHQ9 KLC2-202ENST00000394065 3755 ntTSL 2 BASIC13.26□□□□□ -0.293e-6■■■□□ 16.1
DDX55Q8NHQ9 COG4-202ENST00000393612 2756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.313e-6■■■□□ 16.1
DDX55Q8NHQ9 CEP192-212ENST00000540847 2485 ntTSL 213.1□□□□□ -0.313e-6■■■□□ 16.1
DDX55Q8NHQ9 GLOD4-215ENST00000576419 705 ntTSL 312.86□□□□□ -0.353e-6■■■□□ 16.1
DDX55Q8NHQ9 GLOD4-219ENST00000628529 111 ntTSL 5 BASIC12.54□□□□□ -0.43e-6■■■□□ 16.1
DDX55Q8NHQ9 JPT2-210ENST00000566925 570 ntTSL 412.21□□□□□ -0.453e-6■■■□□ 16.1
DDX55Q8NHQ9 COG4-201ENST00000323786 2833 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.483e-6■■■□□ 16.1
DDX55Q8NHQ9 GLOD4-209ENST00000574581 677 ntTSL 311.99□□□□□ -0.493e-6■■■□□ 16.1
DDX55Q8NHQ9 CEP192-210ENST00000513183 703 ntTSL 311.98□□□□□ -0.493e-6■■■□□ 16.1
DDX55Q8NHQ9 KIF22-204ENST00000563263 600 ntTSL 311.86□□□□□ -0.513e-6■■■□□ 16.1
DDX55Q8NHQ9 COG4-211ENST00000564415 3000 ntTSL 511.84□□□□□ -0.513e-6■■■□□ 16.1
DDX55Q8NHQ9 GLOD4-201ENST00000301328 1809 ntTSL 1 (best) BASIC11.63□□□□□ -0.553e-6■■■□□ 16.1
DDX55Q8NHQ9 RELA-205ENST00000525693 3183 ntTSL 1 (best) BASIC11.57□□□□□ -0.561e-17■■■□□ 16.1
DDX55Q8NHQ9 USP21-206ENST00000485277 863 ntTSL 511.52□□□□□ -0.573e-6■■■□□ 16.1
DDX55Q8NHQ9 COG4-213ENST00000565715 575 ntTSL 211.51□□□□□ -0.573e-6■■■□□ 16.1
DDX55Q8NHQ9 COG4-203ENST00000482252 2953 ntTSL 211.49□□□□□ -0.573e-6■■■□□ 16.1
DDX55Q8NHQ9 TSPAN14-206ENST00000372164 5476 ntTSL 1 (best) BASIC11.4□□□□□ -0.583e-11■■■□□ 16.1
DDX55Q8NHQ9 RELA-217ENST00000531484 2251 ntTSL 211.36□□□□□ -0.591e-17■■■□□ 16.1
DDX55Q8NHQ9 GLOD4-207ENST00000574354 558 ntTSL 411.14□□□□□ -0.633e-6■■■□□ 16.1
DDX55Q8NHQ9 COG4-207ENST00000530314 3488 ntTSL 1 (best)11.05□□□□□ -0.643e-6■■■□□ 16.1
DDX55Q8NHQ9 SMG9-202ENST00000594081 563 ntTSL 410.88□□□□□ -0.671e-8■■■□□ 16.1
DDX55Q8NHQ9 GLOD4-214ENST00000576239 2737 ntTSL 210.71□□□□□ -0.693e-6■■■□□ 16.1
DDX55Q8NHQ9 LARP1B-202ENST00000394288 2151 ntTSL 1 (best) BASIC10.52□□□□□ -0.723e-6■■■□□ 16.1
DDX55Q8NHQ9 GLOD4-205ENST00000572220 428 ntTSL 510.42□□□□□ -0.743e-6■■■□□ 16.1
DDX55Q8NHQ9 GLOD4-213ENST00000575851 1063 ntTSL 310.31□□□□□ -0.763e-6■■■□□ 16.1
DDX55Q8NHQ9 LARP1B-210ENST00000512292 3105 ntTSL 1 (best) BASIC10.07□□□□□ -0.83e-6■■■□□ 16.1
DDX55Q8NHQ9 LARP1B-207ENST00000507377 1593 ntTSL 29.91□□□□□ -0.823e-6■■■□□ 16.1
DDX55Q8NHQ9 CEP192-202ENST00000430049 3286 ntTSL 1 (best) BASIC9.66□□□□□ -0.863e-6■■■□□ 16.1
DDX55Q8NHQ9 CEP192-208ENST00000510237 6548 ntTSL 1 (best)9.19□□□□□ -0.943e-6■■■□□ 16.1
DDX55Q8NHQ9 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC8.86□□□□□ -0.993e-6■■■□□ 16.1
DDX55Q8NHQ9 CEP192-215ENST00000589993 3284 ntTSL 58.29□□□□□ -1.083e-6■■■□□ 16.1
DDX55Q8NHQ9 CEP192-211ENST00000513432 8635 ntTSL 1 (best)7.77□□□□□ -1.173e-6■■■□□ 16.1
DDX55Q8NHQ9 LARP1B-209ENST00000508819 1891 ntTSL 57.61□□□□□ -1.193e-6■■■□□ 16.1
DDX55Q8NHQ9 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.243e-6■■■□□ 16.1
DDX55Q8NHQ9 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.283e-11■■■□□ 16.1
DDX55Q8NHQ9 CEP192-209ENST00000511820 6455 ntTSL 1 (best)6.72□□□□□ -1.333e-6■■■□□ 16.1
DDX55Q8NHQ9 CASC3-202ENST00000394114 2792 ntTSL 26.52□□□□□ -1.373e-9■■■□□ 16.1
Retrieved 100 of 15,504 protein–RNA pairs in 194.3 ms