Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM13O60858 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM13O60858 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM13O60858 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM13O60858 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.85■□□□□ 0.93
TRIM13O60858 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM13O60858 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM13O60858 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM13O60858 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM13O60858 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM13O60858 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM13O60858 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM13O60858 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.84■□□□□ 0.93
TRIM13O60858 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM13O60858 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM13O60858 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM13O60858 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM13O60858 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM13O60858 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
TRIM13O60858 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM13O60858 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM13O60858 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TRIM13O60858 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.84■□□□□ 0.93
TRIM13O60858 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
TRIM13O60858 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM13O60858 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
TRIM13O60858 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM13O60858 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM13O60858 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM13O60858 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
TRIM13O60858 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
TRIM13O60858 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM13O60858 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
TRIM13O60858 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.84■□□□□ 0.93
TRIM13O60858 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM13O60858 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.83■□□□□ 0.93
TRIM13O60858 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.83■□□□□ 0.93
TRIM13O60858 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
TRIM13O60858 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
TRIM13O60858 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM13O60858 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.83■□□□□ 0.92
TRIM13O60858 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM13O60858 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
TRIM13O60858 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM13O60858 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM13O60858 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.83■□□□□ 0.92
TRIM13O60858 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.83■□□□□ 0.92
TRIM13O60858 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM13O60858 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM13O60858 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM13O60858 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.82■□□□□ 0.92
TRIM13O60858 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM13O60858 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM13O60858 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
TRIM13O60858 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM13O60858 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM13O60858 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM13O60858 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.82■□□□□ 0.92
TRIM13O60858 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.82■□□□□ 0.92
TRIM13O60858 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM13O60858 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
TRIM13O60858 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM13O60858 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM13O60858 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM13O60858 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM13O60858 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM13O60858 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM13O60858 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM13O60858 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.81■□□□□ 0.92
TRIM13O60858 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM13O60858 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM13O60858 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM13O60858 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM13O60858 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM13O60858 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM13O60858 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM13O60858 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM13O60858 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM13O60858 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.81■□□□□ 0.92
TRIM13O60858 LINC01006-201ENST00000333319 2292 ntBASIC20.81■□□□□ 0.92
TRIM13O60858 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
TRIM13O60858 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM13O60858 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM13O60858 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM13O60858 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM13O60858 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM13O60858 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.8■□□□□ 0.92
TRIM13O60858 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM13O60858 FEM1AP1-201ENST00000431297 1995 ntBASIC20.8■□□□□ 0.92
TRIM13O60858 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM13O60858 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM13O60858 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM13O60858 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
TRIM13O60858 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM13O60858 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM13O60858 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM13O60858 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM13O60858 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM13O60858 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM13O60858 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms