Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SGCEO43556 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SGCEO43556 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SGCEO43556 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SGCEO43556 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SGCEO43556 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SGCEO43556 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SGCEO43556 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SGCEO43556 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SGCEO43556 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.69■□□□□ 0.58
SGCEO43556 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC18.69■□□□□ 0.58
SGCEO43556 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.69■□□□□ 0.58
SGCEO43556 AC104564.3-201ENST00000582367 638 ntBASIC18.69■□□□□ 0.58
SGCEO43556 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.69■□□□□ 0.58
SGCEO43556 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SGCEO43556 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SGCEO43556 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SGCEO43556 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SGCEO43556 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SGCEO43556 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.69■□□□□ 0.58
SGCEO43556 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SGCEO43556 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.68■□□□□ 0.58
SGCEO43556 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SGCEO43556 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SGCEO43556 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.68■□□□□ 0.58
SGCEO43556 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.68■□□□□ 0.58
SGCEO43556 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC18.68■□□□□ 0.58
SGCEO43556 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.68■□□□□ 0.58
SGCEO43556 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SGCEO43556 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SGCEO43556 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SGCEO43556 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.68■□□□□ 0.58
SGCEO43556 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SGCEO43556 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SGCEO43556 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.67■□□□□ 0.58
SGCEO43556 AC244015.2-201ENST00000616358 1861 ntBASIC18.67■□□□□ 0.58
SGCEO43556 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SGCEO43556 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
SGCEO43556 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SGCEO43556 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SGCEO43556 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SGCEO43556 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.67■□□□□ 0.58
SGCEO43556 MIR638-201ENST00000385237 100 ntBASIC18.67■□□□□ 0.58
SGCEO43556 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.67■□□□□ 0.58
SGCEO43556 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SGCEO43556 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SGCEO43556 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SGCEO43556 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.67■□□□□ 0.58
SGCEO43556 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.67■□□□□ 0.58
SGCEO43556 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SGCEO43556 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.67■□□□□ 0.58
SGCEO43556 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SGCEO43556 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SGCEO43556 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SGCEO43556 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SGCEO43556 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SGCEO43556 AP006587.3-201ENST00000525742 1516 ntBASIC18.66■□□□□ 0.58
SGCEO43556 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.66■□□□□ 0.58
SGCEO43556 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SGCEO43556 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SGCEO43556 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.66■□□□□ 0.58
SGCEO43556 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SGCEO43556 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
SGCEO43556 AC009237.3-201ENST00000393279 1427 ntBASIC18.66■□□□□ 0.58
SGCEO43556 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
SGCEO43556 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SGCEO43556 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SGCEO43556 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
SGCEO43556 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SGCEO43556 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SGCEO43556 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
SGCEO43556 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SGCEO43556 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC18.65■□□□□ 0.58
SGCEO43556 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.65■□□□□ 0.58
SGCEO43556 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SGCEO43556 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.64■□□□□ 0.58
SGCEO43556 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SGCEO43556 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.64■□□□□ 0.57
SGCEO43556 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.64■□□□□ 0.57
SGCEO43556 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SGCEO43556 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SGCEO43556 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SGCEO43556 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SGCEO43556 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SGCEO43556 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SGCEO43556 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SGCEO43556 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SGCEO43556 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.64■□□□□ 0.57
SGCEO43556 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SGCEO43556 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SGCEO43556 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SGCEO43556 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
SGCEO43556 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.64■□□□□ 0.57
SGCEO43556 BX005040.4-201ENST00000637145 1518 ntBASIC18.64■□□□□ 0.57
SGCEO43556 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.64■□□□□ 0.57
SGCEO43556 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SGCEO43556 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SGCEO43556 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.63■□□□□ 0.57
SGCEO43556 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.63■□□□□ 0.57
SGCEO43556 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms