Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV17A0A0B4J275 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV17A0A0B4J275 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV17A0A0B4J275 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 MIPEPP3-201ENST00000412105 444 ntBASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.27■□□□□ 0.68
TRAV17A0A0B4J275 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRAV17A0A0B4J275 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
TRAV17A0A0B4J275 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.27■□□□□ 0.67
TRAV17A0A0B4J275 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
TRAV17A0A0B4J275 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
TRAV17A0A0B4J275 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.26■□□□□ 0.67
TRAV17A0A0B4J275 AC093323.1-202ENST00000635031 2045 ntBASIC19.26■□□□□ 0.67
TRAV17A0A0B4J275 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.26■□□□□ 0.67
TRAV17A0A0B4J275 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.26■□□□□ 0.67
TRAV17A0A0B4J275 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV17A0A0B4J275 FAM201B-201ENST00000458407 597 ntBASIC19.26■□□□□ 0.67
TRAV17A0A0B4J275 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.26■□□□□ 0.67
TRAV17A0A0B4J275 AL162412.1-201ENST00000567129 965 ntBASIC19.26■□□□□ 0.67
TRAV17A0A0B4J275 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV17A0A0B4J275 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV17A0A0B4J275 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 AC098934.4-201ENST00000564127 592 ntBASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 AL591742.1-201ENST00000604433 565 ntBASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 AC016405.3-201ENST00000607710 860 ntBASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV17A0A0B4J275 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 AC243732.1-201ENST00000612648 864 ntBASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 AC092118.2-201ENST00000613495 667 ntBASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 RBM17P2-201ENST00000616397 1405 ntBASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV17A0A0B4J275 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV17A0A0B4J275 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV17A0A0B4J275 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV17A0A0B4J275 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
TRAV17A0A0B4J275 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
TRAV17A0A0B4J275 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.22■□□□□ 0.67
TRAV17A0A0B4J275 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
TRAV17A0A0B4J275 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TRAV17A0A0B4J275 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms