Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.24■□□□□ 0.83
PIF1Q9H611 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
PIF1Q9H611 AL117332.1-201ENST00000622628 974 ntBASIC20.24■□□□□ 0.83
PIF1Q9H611 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
PIF1Q9H611 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PIF1Q9H611 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.24■□□□□ 0.83
PIF1Q9H611 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PIF1Q9H611 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
PIF1Q9H611 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.24■□□□□ 0.83
PIF1Q9H611 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PIF1Q9H611 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.23■□□□□ 0.83
PIF1Q9H611 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PIF1Q9H611 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PIF1Q9H611 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
PIF1Q9H611 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PIF1Q9H611 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PIF1Q9H611 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PIF1Q9H611 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PIF1Q9H611 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PIF1Q9H611 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.23■□□□□ 0.83
PIF1Q9H611 OR7E47P-201ENST00000546390 1422 ntBASIC20.23■□□□□ 0.83
PIF1Q9H611 AL031602.1-201ENST00000633169 911 ntBASIC20.23■□□□□ 0.83
PIF1Q9H611 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.23■□□□□ 0.83
PIF1Q9H611 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PIF1Q9H611 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
PIF1Q9H611 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
PIF1Q9H611 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PIF1Q9H611 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PIF1Q9H611 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.22■□□□□ 0.83
PIF1Q9H611 AC133637.1-201ENST00000624115 1537 ntBASIC20.22■□□□□ 0.83
PIF1Q9H611 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
PIF1Q9H611 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
PIF1Q9H611 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PIF1Q9H611 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
PIF1Q9H611 AC006455.2-201ENST00000429931 906 ntBASIC20.22■□□□□ 0.83
PIF1Q9H611 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.22■□□□□ 0.83
PIF1Q9H611 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PIF1Q9H611 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PIF1Q9H611 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PIF1Q9H611 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PIF1Q9H611 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PIF1Q9H611 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
PIF1Q9H611 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PIF1Q9H611 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PIF1Q9H611 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
PIF1Q9H611 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PIF1Q9H611 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PIF1Q9H611 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.21■□□□□ 0.83
PIF1Q9H611 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PIF1Q9H611 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.21■□□□□ 0.83
PIF1Q9H611 pRNA.6-201ENST00000610482 90 ntBASIC20.21■□□□□ 0.83
PIF1Q9H611 pRNA.5-201ENST00000612139 90 ntBASIC20.21■□□□□ 0.83
PIF1Q9H611 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PIF1Q9H611 pRNA.11-201ENST00000618423 90 ntBASIC20.21■□□□□ 0.83
PIF1Q9H611 pRNA.13-201ENST00000619112 90 ntBASIC20.21■□□□□ 0.83
PIF1Q9H611 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.21■□□□□ 0.83
PIF1Q9H611 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.21■□□□□ 0.83
PIF1Q9H611 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PIF1Q9H611 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
PIF1Q9H611 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.21■□□□□ 0.83
PIF1Q9H611 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.21■□□□□ 0.83
PIF1Q9H611 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
PIF1Q9H611 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.2■□□□□ 0.82
PIF1Q9H611 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
PIF1Q9H611 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PIF1Q9H611 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PIF1Q9H611 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
PIF1Q9H611 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PIF1Q9H611 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.2■□□□□ 0.82
PIF1Q9H611 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.2■□□□□ 0.82
PIF1Q9H611 AC104564.3-201ENST00000582367 638 ntBASIC20.2■□□□□ 0.82
PIF1Q9H611 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
PIF1Q9H611 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PIF1Q9H611 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PIF1Q9H611 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PIF1Q9H611 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PIF1Q9H611 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.2■□□□□ 0.82
PIF1Q9H611 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PIF1Q9H611 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.19■□□□□ 0.82
PIF1Q9H611 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PIF1Q9H611 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.19■□□□□ 0.82
PIF1Q9H611 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PIF1Q9H611 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PIF1Q9H611 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PIF1Q9H611 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.19■□□□□ 0.82
PIF1Q9H611 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
PIF1Q9H611 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PIF1Q9H611 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PIF1Q9H611 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.19■□□□□ 0.82
PIF1Q9H611 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.19■□□□□ 0.82
PIF1Q9H611 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.18■□□□□ 0.82
PIF1Q9H611 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
PIF1Q9H611 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PIF1Q9H611 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PIF1Q9H611 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PIF1Q9H611 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
PIF1Q9H611 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PIF1Q9H611 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.18■□□□□ 0.82
PIF1Q9H611 AL356441.2-201ENST00000443009 864 ntBASIC20.18■□□□□ 0.82
PIF1Q9H611 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms