Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC28.79■■■□□ 2.2
ABCA3Q99758 OR2A1-AS1-201ENST00000462305 773 ntBASIC28.79■■■□□ 2.2
ABCA3Q99758 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC28.79■■■□□ 2.2
ABCA3Q99758 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
ABCA3Q99758 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC28.79■■■□□ 2.2
ABCA3Q99758 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC28.79■■■□□ 2.2
ABCA3Q99758 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
ABCA3Q99758 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC28.79■■■□□ 2.2
ABCA3Q99758 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
ABCA3Q99758 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
ABCA3Q99758 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
ABCA3Q99758 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
ABCA3Q99758 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
ABCA3Q99758 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
ABCA3Q99758 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC28.78■■■□□ 2.2
ABCA3Q99758 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC28.78■■■□□ 2.2
ABCA3Q99758 OR7E47P-201ENST00000546390 1422 ntBASIC28.78■■■□□ 2.2
ABCA3Q99758 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
ABCA3Q99758 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
ABCA3Q99758 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
ABCA3Q99758 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC28.77■■■□□ 2.2
ABCA3Q99758 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC28.77■■■□□ 2.2
ABCA3Q99758 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC28.77■■■□□ 2.2
ABCA3Q99758 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC28.77■■■□□ 2.2
ABCA3Q99758 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
ABCA3Q99758 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
ABCA3Q99758 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC28.77■■■□□ 2.2
ABCA3Q99758 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC28.77■■■□□ 2.2
ABCA3Q99758 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC28.77■■■□□ 2.2
ABCA3Q99758 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC28.77■■■□□ 2.2
ABCA3Q99758 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
ABCA3Q99758 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC28.77■■■□□ 2.2
ABCA3Q99758 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
ABCA3Q99758 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC28.77■■■□□ 2.2
ABCA3Q99758 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC28.77■■■□□ 2.2
ABCA3Q99758 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC28.77■■■□□ 2.2
ABCA3Q99758 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
ABCA3Q99758 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC28.76■■■□□ 2.2
ABCA3Q99758 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
ABCA3Q99758 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
ABCA3Q99758 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
ABCA3Q99758 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC28.76■■■□□ 2.19
ABCA3Q99758 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC28.76■■■□□ 2.19
ABCA3Q99758 CD44-222ENST00000526025 1052 ntTSL 2 BASIC28.76■■■□□ 2.19
ABCA3Q99758 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC28.76■■■□□ 2.19
ABCA3Q99758 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC28.76■■■□□ 2.19
ABCA3Q99758 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC28.76■■■□□ 2.19
ABCA3Q99758 KRT17P1-201ENST00000399211 1546 ntBASIC28.75■■■□□ 2.19
ABCA3Q99758 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC28.75■■■□□ 2.19
ABCA3Q99758 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC28.75■■■□□ 2.19
ABCA3Q99758 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
ABCA3Q99758 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC28.75■■■□□ 2.19
ABCA3Q99758 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC28.75■■■□□ 2.19
ABCA3Q99758 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
ABCA3Q99758 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
ABCA3Q99758 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
ABCA3Q99758 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
ABCA3Q99758 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC28.74■■■□□ 2.19
ABCA3Q99758 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
ABCA3Q99758 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
ABCA3Q99758 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
ABCA3Q99758 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC28.74■■■□□ 2.19
ABCA3Q99758 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
ABCA3Q99758 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC28.74■■■□□ 2.19
ABCA3Q99758 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC28.74■■■□□ 2.19
ABCA3Q99758 GATS-209ENST00000454084 1030 ntTSL 3 BASIC28.74■■■□□ 2.19
ABCA3Q99758 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC28.74■■■□□ 2.19
ABCA3Q99758 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
ABCA3Q99758 AC243732.1-201ENST00000612648 864 ntBASIC28.74■■■□□ 2.19
ABCA3Q99758 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC28.74■■■□□ 2.19
ABCA3Q99758 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC28.74■■■□□ 2.19
ABCA3Q99758 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
ABCA3Q99758 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
ABCA3Q99758 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC28.73■■■□□ 2.19
ABCA3Q99758 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC28.73■■■□□ 2.19
ABCA3Q99758 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
ABCA3Q99758 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC28.73■■■□□ 2.19
ABCA3Q99758 MIR4497-201ENST00000583208 89 ntBASIC28.73■■■□□ 2.19
ABCA3Q99758 AC073912.3-201ENST00000624414 853 ntBASIC28.73■■■□□ 2.19
ABCA3Q99758 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
ABCA3Q99758 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
ABCA3Q99758 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC28.72■■■□□ 2.19
ABCA3Q99758 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
ABCA3Q99758 AC092068.2-201ENST00000590491 1708 ntBASIC28.72■■■□□ 2.19
ABCA3Q99758 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC28.72■■■□□ 2.19
ABCA3Q99758 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
ABCA3Q99758 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC28.72■■■□□ 2.19
ABCA3Q99758 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC28.72■■■□□ 2.19
ABCA3Q99758 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
ABCA3Q99758 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC28.72■■■□□ 2.19
ABCA3Q99758 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC28.71■■■□□ 2.19
ABCA3Q99758 UBE2SP1-201ENST00000450587 669 ntBASIC28.71■■■□□ 2.19
ABCA3Q99758 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
ABCA3Q99758 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC28.71■■■□□ 2.19
ABCA3Q99758 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC28.71■■■□□ 2.19
ABCA3Q99758 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
ABCA3Q99758 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
ABCA3Q99758 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
ABCA3Q99758 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC28.7■■■□□ 2.19
ABCA3Q99758 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms