Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPAS1Q99742 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.37■□□□□ 0.69
NPAS1Q99742 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
NPAS1Q99742 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPAS1Q99742 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
NPAS1Q99742 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
NPAS1Q99742 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NPAS1Q99742 AC009237.3-201ENST00000393279 1427 ntBASIC19.37■□□□□ 0.69
NPAS1Q99742 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.37■□□□□ 0.69
NPAS1Q99742 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NPAS1Q99742 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPAS1Q99742 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.37■□□□□ 0.69
NPAS1Q99742 DUX4L2-201ENST00000561772 1275 ntBASIC19.37■□□□□ 0.69
NPAS1Q99742 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.37■□□□□ 0.69
NPAS1Q99742 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
NPAS1Q99742 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.37■□□□□ 0.69
NPAS1Q99742 DUX4L6-201ENST00000626483 1275 ntBASIC19.37■□□□□ 0.69
NPAS1Q99742 DUX4L1-201ENST00000627662 1275 ntBASIC19.37■□□□□ 0.69
NPAS1Q99742 DUX4L8-201ENST00000629013 1275 ntBASIC19.37■□□□□ 0.69
NPAS1Q99742 DUX4L3-201ENST00000630187 1275 ntBASIC19.37■□□□□ 0.69
NPAS1Q99742 DUX4L7-201ENST00000630678 1275 ntBASIC19.37■□□□□ 0.69
NPAS1Q99742 DUX4L5-201ENST00000630834 1275 ntBASIC19.37■□□□□ 0.69
NPAS1Q99742 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
NPAS1Q99742 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPAS1Q99742 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPAS1Q99742 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NPAS1Q99742 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NPAS1Q99742 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NPAS1Q99742 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.36■□□□□ 0.69
NPAS1Q99742 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NPAS1Q99742 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.36■□□□□ 0.69
NPAS1Q99742 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
NPAS1Q99742 LINC02228-203ENST00000641970 1355 ntBASIC19.36■□□□□ 0.69
NPAS1Q99742 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
NPAS1Q99742 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NPAS1Q99742 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
NPAS1Q99742 AL034346.1-201ENST00000568244 1277 ntBASIC19.36■□□□□ 0.69
NPAS1Q99742 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NPAS1Q99742 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NPAS1Q99742 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NPAS1Q99742 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NPAS1Q99742 AC003102.1-202ENST00000563394 1796 ntBASIC19.36■□□□□ 0.69
NPAS1Q99742 FBXW4P1-201ENST00000426721 2239 ntBASIC19.36■□□□□ 0.69
NPAS1Q99742 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
NPAS1Q99742 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NPAS1Q99742 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NPAS1Q99742 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NPAS1Q99742 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NPAS1Q99742 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
NPAS1Q99742 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
NPAS1Q99742 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
NPAS1Q99742 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NPAS1Q99742 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
NPAS1Q99742 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.35■□□□□ 0.69
NPAS1Q99742 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NPAS1Q99742 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NPAS1Q99742 KRT18P14-201ENST00000534205 1250 ntBASIC19.35■□□□□ 0.69
NPAS1Q99742 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
NPAS1Q99742 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.35■□□□□ 0.69
NPAS1Q99742 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.35■□□□□ 0.69
NPAS1Q99742 KRT18P61-201ENST00000585825 1298 ntBASIC19.35■□□□□ 0.69
NPAS1Q99742 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.35■□□□□ 0.69
NPAS1Q99742 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
NPAS1Q99742 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NPAS1Q99742 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NPAS1Q99742 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NPAS1Q99742 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NPAS1Q99742 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NPAS1Q99742 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.34■□□□□ 0.69
NPAS1Q99742 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NPAS1Q99742 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.34■□□□□ 0.69
NPAS1Q99742 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
NPAS1Q99742 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.34■□□□□ 0.69
NPAS1Q99742 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
NPAS1Q99742 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NPAS1Q99742 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
NPAS1Q99742 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.34■□□□□ 0.69
NPAS1Q99742 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.34■□□□□ 0.69
NPAS1Q99742 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NPAS1Q99742 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NPAS1Q99742 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NPAS1Q99742 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
NPAS1Q99742 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
NPAS1Q99742 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
NPAS1Q99742 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
NPAS1Q99742 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.33■□□□□ 0.69
NPAS1Q99742 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
NPAS1Q99742 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
NPAS1Q99742 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
NPAS1Q99742 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.33■□□□□ 0.68
NPAS1Q99742 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.33■□□□□ 0.68
NPAS1Q99742 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.33■□□□□ 0.68
NPAS1Q99742 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
NPAS1Q99742 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
NPAS1Q99742 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
NPAS1Q99742 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
NPAS1Q99742 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
NPAS1Q99742 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
NPAS1Q99742 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
NPAS1Q99742 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms