Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.12■□□□□ 0.97
ZNF549Q6P9A3 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.12■□□□□ 0.97
ZNF549Q6P9A3 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF549Q6P9A3 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF549Q6P9A3 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.12■□□□□ 0.97
ZNF549Q6P9A3 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF549Q6P9A3 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF549Q6P9A3 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF549Q6P9A3 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.12■□□□□ 0.97
ZNF549Q6P9A3 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.12■□□□□ 0.97
ZNF549Q6P9A3 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF549Q6P9A3 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF549Q6P9A3 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.12■□□□□ 0.97
ZNF549Q6P9A3 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.12■□□□□ 0.97
ZNF549Q6P9A3 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 AC105233.4-201ENST00000642045 216 ntBASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 AC005229.4-201ENST00000610085 2198 ntBASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF549Q6P9A3 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.1■□□□□ 0.97
ZNF549Q6P9A3 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.1■□□□□ 0.97
ZNF549Q6P9A3 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF549Q6P9A3 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF549Q6P9A3 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.1■□□□□ 0.97
ZNF549Q6P9A3 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF549Q6P9A3 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF549Q6P9A3 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZNF549Q6P9A3 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF549Q6P9A3 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF549Q6P9A3 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.09■□□□□ 0.97
ZNF549Q6P9A3 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF549Q6P9A3 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF549Q6P9A3 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF549Q6P9A3 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ZNF549Q6P9A3 MIR572-201ENST00000384983 95 ntBASIC21.09■□□□□ 0.97
ZNF549Q6P9A3 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.09■□□□□ 0.97
ZNF549Q6P9A3 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.09■□□□□ 0.97
ZNF549Q6P9A3 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.09■□□□□ 0.97
ZNF549Q6P9A3 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.09■□□□□ 0.97
ZNF549Q6P9A3 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
ZNF549Q6P9A3 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF549Q6P9A3 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF549Q6P9A3 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF549Q6P9A3 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF549Q6P9A3 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF549Q6P9A3 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF549Q6P9A3 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF549Q6P9A3 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZNF549Q6P9A3 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.08■□□□□ 0.97
ZNF549Q6P9A3 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.08■□□□□ 0.97
ZNF549Q6P9A3 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.08■□□□□ 0.97
ZNF549Q6P9A3 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
ZNF549Q6P9A3 FEM1AP4-201ENST00000443167 1987 ntBASIC21.08■□□□□ 0.96
ZNF549Q6P9A3 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
ZNF549Q6P9A3 AF106564.1-201ENST00000607058 2553 ntBASIC21.07■□□□□ 0.96
ZNF549Q6P9A3 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.07■□□□□ 0.96
ZNF549Q6P9A3 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.07■□□□□ 0.96
ZNF549Q6P9A3 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF549Q6P9A3 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.07■□□□□ 0.96
ZNF549Q6P9A3 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.07■□□□□ 0.96
ZNF549Q6P9A3 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF549Q6P9A3 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF549Q6P9A3 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms