Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
H3F3AP84243 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
H3F3AP84243 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
H3F3AP84243 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
H3F3AP84243 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
H3F3AP84243 AC026271.2-201ENST00000428091 497 ntBASIC19.04■□□□□ 0.64
H3F3AP84243 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
H3F3AP84243 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.04■□□□□ 0.64
H3F3AP84243 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.04■□□□□ 0.64
H3F3AP84243 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.04■□□□□ 0.64
H3F3AP84243 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.04■□□□□ 0.64
H3F3AP84243 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
H3F3AP84243 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
H3F3AP84243 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
H3F3AP84243 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.04■□□□□ 0.64
H3F3AP84243 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.04■□□□□ 0.64
H3F3AP84243 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
H3F3AP84243 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
H3F3AP84243 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
H3F3AP84243 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
H3F3AP84243 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
H3F3AP84243 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
H3F3AP84243 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
H3F3AP84243 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
H3F3AP84243 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.02■□□□□ 0.64
H3F3AP84243 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
H3F3AP84243 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.02■□□□□ 0.64
H3F3AP84243 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.02■□□□□ 0.64
H3F3AP84243 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.02■□□□□ 0.64
H3F3AP84243 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
H3F3AP84243 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.64
H3F3AP84243 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
H3F3AP84243 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
H3F3AP84243 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.02■□□□□ 0.64
H3F3AP84243 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.02■□□□□ 0.64
H3F3AP84243 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
H3F3AP84243 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
H3F3AP84243 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
H3F3AP84243 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
H3F3AP84243 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
H3F3AP84243 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
H3F3AP84243 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
H3F3AP84243 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
H3F3AP84243 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.01■□□□□ 0.63
H3F3AP84243 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
H3F3AP84243 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.01■□□□□ 0.63
H3F3AP84243 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
H3F3AP84243 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.01■□□□□ 0.63
H3F3AP84243 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.01■□□□□ 0.63
H3F3AP84243 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
H3F3AP84243 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.01■□□□□ 0.63
H3F3AP84243 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
H3F3AP84243 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
H3F3AP84243 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
H3F3AP84243 KRT18P14-201ENST00000534205 1250 ntBASIC19.01■□□□□ 0.63
H3F3AP84243 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.01■□□□□ 0.63
H3F3AP84243 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.01■□□□□ 0.63
H3F3AP84243 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
H3F3AP84243 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
H3F3AP84243 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
H3F3AP84243 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
H3F3AP84243 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
H3F3AP84243 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
H3F3AP84243 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19■□□□□ 0.63
H3F3AP84243 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19■□□□□ 0.63
H3F3AP84243 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
H3F3AP84243 RARRES2P6-201ENST00000567333 442 ntBASIC19■□□□□ 0.63
H3F3AP84243 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19■□□□□ 0.63
H3F3AP84243 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19■□□□□ 0.63
H3F3AP84243 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
H3F3AP84243 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
H3F3AP84243 FBXW4P1-201ENST00000426721 2239 ntBASIC19■□□□□ 0.63
H3F3AP84243 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19■□□□□ 0.63
H3F3AP84243 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
H3F3AP84243 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
H3F3AP84243 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
H3F3AP84243 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
H3F3AP84243 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
H3F3AP84243 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
H3F3AP84243 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
H3F3AP84243 AC079140.4-201ENST00000507448 529 ntBASIC18.99■□□□□ 0.63
H3F3AP84243 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
H3F3AP84243 DUX4L2-201ENST00000561772 1275 ntBASIC18.99■□□□□ 0.63
H3F3AP84243 AC104564.3-201ENST00000582367 638 ntBASIC18.99■□□□□ 0.63
H3F3AP84243 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
H3F3AP84243 AC087623.3-201ENST00000607047 1098 ntBASIC18.99■□□□□ 0.63
H3F3AP84243 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.99■□□□□ 0.63
H3F3AP84243 DUX4L6-201ENST00000626483 1275 ntBASIC18.99■□□□□ 0.63
H3F3AP84243 DUX4L1-201ENST00000627662 1275 ntBASIC18.99■□□□□ 0.63
H3F3AP84243 DUX4L8-201ENST00000629013 1275 ntBASIC18.99■□□□□ 0.63
H3F3AP84243 DUX4L3-201ENST00000630187 1275 ntBASIC18.99■□□□□ 0.63
H3F3AP84243 DUX4L7-201ENST00000630678 1275 ntBASIC18.99■□□□□ 0.63
H3F3AP84243 DUX4L5-201ENST00000630834 1275 ntBASIC18.99■□□□□ 0.63
H3F3AP84243 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
H3F3AP84243 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
H3F3AP84243 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
H3F3AP84243 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.99■□□□□ 0.63
H3F3AP84243 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
H3F3AP84243 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
H3F3AP84243 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms