Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CL1P78423 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CL1P78423 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
CX3CL1P78423 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CL1P78423 MIR572-201ENST00000384983 95 ntBASIC17.09■□□□□ 0.33
CX3CL1P78423 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
CX3CL1P78423 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CL1P78423 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC17.09■□□□□ 0.33
CX3CL1P78423 SMUG1P1-201ENST00000590640 811 ntBASIC17.09■□□□□ 0.33
CX3CL1P78423 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CL1P78423 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CL1P78423 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC17.09■□□□□ 0.33
CX3CL1P78423 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CL1P78423 BID-212ENST00000614949 1988 ntTSL 5 BASIC17.09■□□□□ 0.33
CX3CL1P78423 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CL1P78423 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CL1P78423 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CL1P78423 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CX3CL1P78423 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
CX3CL1P78423 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
CX3CL1P78423 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CX3CL1P78423 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC17.08■□□□□ 0.33
CX3CL1P78423 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC17.08■□□□□ 0.33
CX3CL1P78423 AL121603.2-201ENST00000557373 2117 ntBASIC17.08■□□□□ 0.33
CX3CL1P78423 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC17.08■□□□□ 0.33
CX3CL1P78423 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CX3CL1P78423 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CX3CL1P78423 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CX3CL1P78423 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CX3CL1P78423 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC17.08■□□□□ 0.32
CX3CL1P78423 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC17.08■□□□□ 0.32
CX3CL1P78423 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CX3CL1P78423 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CX3CL1P78423 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC17.08■□□□□ 0.32
CX3CL1P78423 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.08■□□□□ 0.32
CX3CL1P78423 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC17.08■□□□□ 0.32
CX3CL1P78423 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC17.08■□□□□ 0.32
CX3CL1P78423 AC105233.4-201ENST00000642045 216 ntBASIC17.08■□□□□ 0.32
CX3CL1P78423 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CX3CL1P78423 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CX3CL1P78423 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CX3CL1P78423 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CX3CL1P78423 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CX3CL1P78423 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CX3CL1P78423 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.08■□□□□ 0.32
CX3CL1P78423 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CL1P78423 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CL1P78423 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CX3CL1P78423 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CL1P78423 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CL1P78423 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.07■□□□□ 0.32
CX3CL1P78423 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CL1P78423 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CL1P78423 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CL1P78423 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CL1P78423 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CL1P78423 AC105265.2-201ENST00000467189 838 ntBASIC17.07■□□□□ 0.32
CX3CL1P78423 STOX2-205ENST00000513034 807 ntTSL 3 BASIC17.07■□□□□ 0.32
CX3CL1P78423 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CL1P78423 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CL1P78423 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CL1P78423 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC17.06■□□□□ 0.32
CX3CL1P78423 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC17.06■□□□□ 0.32
CX3CL1P78423 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC17.06■□□□□ 0.32
CX3CL1P78423 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC17.06■□□□□ 0.32
CX3CL1P78423 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.06■□□□□ 0.32
CX3CL1P78423 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC17.06■□□□□ 0.32
CX3CL1P78423 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC17.06■□□□□ 0.32
CX3CL1P78423 AP004607.7-201ENST00000527152 1677 ntBASIC17.06■□□□□ 0.32
CX3CL1P78423 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.06■□□□□ 0.32
CX3CL1P78423 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CX3CL1P78423 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CX3CL1P78423 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
CX3CL1P78423 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CX3CL1P78423 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CX3CL1P78423 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CX3CL1P78423 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CX3CL1P78423 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CX3CL1P78423 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC17.05■□□□□ 0.32
CX3CL1P78423 AL034346.1-201ENST00000568244 1277 ntBASIC17.05■□□□□ 0.32
CX3CL1P78423 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC17.05■□□□□ 0.32
CX3CL1P78423 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CX3CL1P78423 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CX3CL1P78423 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms