Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 tW(CCA)G1tW(CCA)G1 72 nt2.49□□□□□ -2.01
CUP9P41817 tW(CCA)G2tW(CCA)G2 72 nt2.49□□□□□ -2.01
CUP9P41817 tW(CCA)JtW(CCA)J 72 nt2.49□□□□□ -2.01
CUP9P41817 tW(CCA)KtW(CCA)K 72 nt2.49□□□□□ -2.01
CUP9P41817 tW(CCA)MtW(CCA)M 72 nt2.49□□□□□ -2.01
CUP9P41817 tW(CCA)PtW(CCA)P 72 nt2.49□□□□□ -2.01
CUP9P41817 YAR069CYAR069C 294 nt2.49□□□□□ -2.01
CUP9P41817 SSU72YNL222W 621 nt2.49□□□□□ -2.01
CUP9P41817 YOR314WYOR314W 330 nt2.49□□□□□ -2.01
CUP9P41817 YPL216WYPL216W 3309 nt2.49□□□□□ -2.01
CUP9P41817 GYP7YDL234C 2241 nt2.49□□□□□ -2.01
CUP9P41817 SGS1YMR190C 4344 nt2.49□□□□□ -2.01
CUP9P41817 MEF1YLR069C 2286 nt2.48□□□□□ -2.01
CUP9P41817 FKS3YMR306W 5358 nt2.48□□□□□ -2.01
CUP9P41817 SFH5YJL145W 885 nt2.48□□□□□ -2.01
CUP9P41817 ATP12YJL180C 978 nt2.48□□□□□ -2.01
CUP9P41817 YOR082CYOR082C 342 nt2.48□□□□□ -2.01
CUP9P41817 CHS3YBR023C 3498 nt2.48□□□□□ -2.01
CUP9P41817 ARG2YJL071W 1725 nt2.48□□□□□ -2.01
CUP9P41817 RAX2YLR084C 3663 nt2.47□□□□□ -2.01
CUP9P41817 YPR148CYPR148C 1308 nt2.47□□□□□ -2.01
CUP9P41817 DSL1YNL258C 2265 nt2.47□□□□□ -2.01
CUP9P41817 TPD3YAL016W 1908 nt2.47□□□□□ -2.01
CUP9P41817 CLB3YDL155W 1284 nt2.47□□□□□ -2.01
CUP9P41817 RPS23AYGR118W 438 nt2.47□□□□□ -2.01
CUP9P41817 YIL054WYIL054W 318 nt2.47□□□□□ -2.01
CUP9P41817 SAW1YAL027W 786 nt2.47□□□□□ -2.01
CUP9P41817 MCA1YOR197W 1299 nt2.47□□□□□ -2.01
CUP9P41817 YOR385WYOR385W 873 nt2.47□□□□□ -2.01
CUP9P41817 RPS23BYPR132W 438 nt2.47□□□□□ -2.01
CUP9P41817 YBR096WYBR096W 693 nt2.47□□□□□ -2.01
CUP9P41817 MSM1YGR171C 1728 nt2.47□□□□□ -2.01
CUP9P41817 TFC4YGR047C 3078 nt2.47□□□□□ -2.01
CUP9P41817 ECM29YHL030W 5607 nt2.46□□□□□ -2.02
CUP9P41817 YPL150WYPL150W 2706 nt2.46□□□□□ -2.02
CUP9P41817 CTK1YKL139W 1587 nt2.46□□□□□ -2.02
CUP9P41817 YDL162CYDL162C 357 nt2.46□□□□□ -2.02
CUP9P41817 GRX3YDR098C 858 nt2.46□□□□□ -2.02
CUP9P41817 RRT13YER066W 558 nt2.46□□□□□ -2.02
CUP9P41817 FRE2YKL220C 2136 nt2.46□□□□□ -2.02
CUP9P41817 PCD1YLR151C 1023 nt2.46□□□□□ -2.02
CUP9P41817 PPA2YMR267W 933 nt2.46□□□□□ -2.02
CUP9P41817 PEX11YOL147C 711 nt2.46□□□□□ -2.02
CUP9P41817 YBR116CYBR116C 528 nt2.46□□□□□ -2.02
CUP9P41817 SEC7YDR170C 6030 nt2.46□□□□□ -2.02
CUP9P41817 RSN1YMR266W 2862 nt2.46□□□□□ -2.02
CUP9P41817 SEC15YGL233W 2733 nt2.46□□□□□ -2.02
CUP9P41817 TGL1YKL140W 1647 nt2.46□□□□□ -2.02
CUP9P41817 RAD55YDR076W 1221 nt2.45□□□□□ -2.02
CUP9P41817 RRP8YDR083W 1179 nt2.45□□□□□ -2.02
CUP9P41817 MPC3YGR243W 441 nt2.45□□□□□ -2.02
CUP9P41817 RAS1YOR101W 930 nt2.45□□□□□ -2.02
CUP9P41817 RPS11BYBR048W 471 nt2.45□□□□□ -2.02
CUP9P41817 RPL36BYPL249C-A 303 nt2.45□□□□□ -2.02
CUP9P41817 PDR3YBL005W 2931 nt2.45□□□□□ -2.02
CUP9P41817 YFL040WYFL040W 1623 nt2.44□□□□□ -2.02
CUP9P41817 RMT2YDR465C 1239 nt2.44□□□□□ -2.02
CUP9P41817 VMA8YEL051W 771 nt2.44□□□□□ -2.02
CUP9P41817 YEL057CYEL057C 702 nt2.44□□□□□ -2.02
CUP9P41817 YOS1YER074W-A 258 nt2.44□□□□□ -2.02
CUP9P41817 KXD1YGL079W 657 nt2.44□□□□□ -2.02
CUP9P41817 AIM25YJR100C 984 nt2.44□□□□□ -2.02
CUP9P41817 TUM1YOR251C 915 nt2.44□□□□□ -2.02
CUP9P41817 TAF3YPL011C 1062 nt2.44□□□□□ -2.02
CUP9P41817 HPA2YPR193C 471 nt2.44□□□□□ -2.02
CUP9P41817 snR43snR43 209 nt2.44□□□□□ -2.02
CUP9P41817 AEP2YMR282C 1743 nt2.44□□□□□ -2.02
CUP9P41817 YHL012WYHL012W 1482 nt2.44□□□□□ -2.02
CUP9P41817 RAD7YJR052W 1698 nt2.44□□□□□ -2.02
CUP9P41817 SLP1YOR154W 1764 nt2.44□□□□□ -2.02
CUP9P41817 YGR067CYGR067C 2415 nt2.43□□□□□ -2.02
CUP9P41817 SRB8YCR081W 4284 nt2.43□□□□□ -2.02
CUP9P41817 ESL1YIL151C 3357 nt2.43□□□□□ -2.02
CUP9P41817 ALG8YOR067C 1734 nt2.43□□□□□ -2.02
CUP9P41817 RPL1BYGL135W 654 nt2.43□□□□□ -2.02
CUP9P41817 JIP3YLR331C 378 nt2.43□□□□□ -2.02
CUP9P41817 RLP7YNL002C 969 nt2.43□□□□□ -2.02
CUP9P41817 YBL108WYBL108W 306 nt2.43□□□□□ -2.02
CUP9P41817 CYC2YOR037W 1101 nt2.43□□□□□ -2.02
CUP9P41817 RPL1AYPL220W 654 nt2.43□□□□□ -2.02
CUP9P41817 MOT1YPL082C 5604 nt2.43□□□□□ -2.02
CUP9P41817 CTF18YMR078C 2226 nt2.43□□□□□ -2.02
CUP9P41817 BNA4YBL098W 1383 nt2.43□□□□□ -2.02
CUP9P41817 YIG1YPL201C 1386 nt2.43□□□□□ -2.02
CUP9P41817 SRC1YML034W 2505 nt2.43□□□□□ -2.02
CUP9P41817 CLB5YPR120C 1308 nt2.42□□□□□ -2.02
CUP9P41817 TGL2YDR058C 981 nt2.42□□□□□ -2.02
CUP9P41817 YPR1YDR368W 939 nt2.42□□□□□ -2.02
CUP9P41817 PBA1YLR199C 831 nt2.42□□□□□ -2.02
CUP9P41817 YLR230WYLR230W 306 nt2.42□□□□□ -2.02
CUP9P41817 YNL144W-AYNL144W-A 84 nt2.42□□□□□ -2.02
CUP9P41817 RPL23AYBL087C 414 nt2.42□□□□□ -2.02
CUP9P41817 YOR387CYOR387C 621 nt2.42□□□□□ -2.02
CUP9P41817 YBR089WYBR089W 600 nt2.42□□□□□ -2.02
CUP9P41817 PMS1YNL082W 2622 nt2.42□□□□□ -2.02
CUP9P41817 NEW1YPL226W 3591 nt2.42□□□□□ -2.02
CUP9P41817 ATP25YMR098C 1839 nt2.42□□□□□ -2.02
CUP9P41817 DBP5YOR046C 1449 nt2.42□□□□□ -2.02
CUP9P41817 SLH1YGR271W 5904 nt2.41□□□□□ -2.02
CUP9P41817 MSA1YOR066W 1890 nt2.41□□□□□ -2.02
Retrieved 100 of 7,029 protein–RNA pairs in 16.3 ms