Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HNF4AP41235 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HNF4AP41235 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.61■□□□□ 0.89
HNF4AP41235 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.61■□□□□ 0.89
HNF4AP41235 AC105233.4-201ENST00000642045 216 ntBASIC20.61■□□□□ 0.89
HNF4AP41235 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HNF4AP41235 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HNF4AP41235 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HNF4AP41235 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
HNF4AP41235 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HNF4AP41235 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
HNF4AP41235 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.6■□□□□ 0.89
HNF4AP41235 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HNF4AP41235 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HNF4AP41235 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HNF4AP41235 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
HNF4AP41235 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HNF4AP41235 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HNF4AP41235 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HNF4AP41235 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HNF4AP41235 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HNF4AP41235 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HNF4AP41235 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HNF4AP41235 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HNF4AP41235 ZNRF2P3-201ENST00000424200 374 ntBASIC20.59■□□□□ 0.89
HNF4AP41235 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HNF4AP41235 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.59■□□□□ 0.89
HNF4AP41235 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HNF4AP41235 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.59■□□□□ 0.89
HNF4AP41235 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HNF4AP41235 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
HNF4AP41235 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HNF4AP41235 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HNF4AP41235 IRS3P-201ENST00000223076 1006 ntBASIC20.58■□□□□ 0.89
HNF4AP41235 MIR572-201ENST00000384983 95 ntBASIC20.58■□□□□ 0.89
HNF4AP41235 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HNF4AP41235 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HNF4AP41235 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.58■□□□□ 0.89
HNF4AP41235 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.58■□□□□ 0.88
HNF4AP41235 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.58■□□□□ 0.88
HNF4AP41235 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
HNF4AP41235 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.88
HNF4AP41235 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.57■□□□□ 0.88
HNF4AP41235 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HNF4AP41235 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HNF4AP41235 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HNF4AP41235 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HNF4AP41235 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HNF4AP41235 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HNF4AP41235 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.57■□□□□ 0.88
HNF4AP41235 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HNF4AP41235 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.57■□□□□ 0.88
HNF4AP41235 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.57■□□□□ 0.88
HNF4AP41235 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
HNF4AP41235 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HNF4AP41235 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.57■□□□□ 0.88
HNF4AP41235 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
HNF4AP41235 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HNF4AP41235 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HNF4AP41235 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HNF4AP41235 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HNF4AP41235 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
HNF4AP41235 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
HNF4AP41235 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HNF4AP41235 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HNF4AP41235 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.56■□□□□ 0.88
HNF4AP41235 AC007375.3-201ENST00000600936 2314 ntBASIC20.56■□□□□ 0.88
HNF4AP41235 AP006587.3-201ENST00000525742 1516 ntBASIC20.56■□□□□ 0.88
HNF4AP41235 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HNF4AP41235 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HNF4AP41235 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
HNF4AP41235 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HNF4AP41235 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HNF4AP41235 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HNF4AP41235 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.55■□□□□ 0.88
HNF4AP41235 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.55■□□□□ 0.88
HNF4AP41235 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HNF4AP41235 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.55■□□□□ 0.88
HNF4AP41235 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.55■□□□□ 0.88
HNF4AP41235 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.55■□□□□ 0.88
HNF4AP41235 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HNF4AP41235 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
HNF4AP41235 MIR6084-201ENST00000622012 110 ntBASIC20.55■□□□□ 0.88
HNF4AP41235 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HNF4AP41235 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
HNF4AP41235 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HNF4AP41235 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HNF4AP41235 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HNF4AP41235 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HNF4AP41235 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HNF4AP41235 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HNF4AP41235 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.54■□□□□ 0.88
HNF4AP41235 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HNF4AP41235 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.54■□□□□ 0.88
HNF4AP41235 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HNF4AP41235 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HNF4AP41235 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
HNF4AP41235 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HNF4AP41235 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.54■□□□□ 0.88
HNF4AP41235 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms