Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CPSF4O95639 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CPSF4O95639 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.22■□□□□ 0.83
CPSF4O95639 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CPSF4O95639 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CPSF4O95639 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CPSF4O95639 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CPSF4O95639 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.21■□□□□ 0.83
CPSF4O95639 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.21■□□□□ 0.83
CPSF4O95639 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
CPSF4O95639 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CPSF4O95639 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CPSF4O95639 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
CPSF4O95639 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CPSF4O95639 SLC47A1P1-202ENST00000449666 945 ntBASIC20.21■□□□□ 0.83
CPSF4O95639 AC131281.2-201ENST00000520478 145 ntBASIC20.21■□□□□ 0.83
CPSF4O95639 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CPSF4O95639 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CPSF4O95639 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
CPSF4O95639 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CPSF4O95639 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CPSF4O95639 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.21■□□□□ 0.83
CPSF4O95639 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CPSF4O95639 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CPSF4O95639 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CPSF4O95639 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CPSF4O95639 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CPSF4O95639 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.2■□□□□ 0.82
CPSF4O95639 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
CPSF4O95639 AC136469.2-201ENST00000623944 1028 ntBASIC20.2■□□□□ 0.82
CPSF4O95639 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.2■□□□□ 0.82
CPSF4O95639 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CPSF4O95639 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CPSF4O95639 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CPSF4O95639 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.2■□□□□ 0.82
CPSF4O95639 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CPSF4O95639 AP004607.7-201ENST00000527152 1677 ntBASIC20.19■□□□□ 0.82
CPSF4O95639 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPSF4O95639 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPSF4O95639 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPSF4O95639 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CPSF4O95639 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CPSF4O95639 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.19■□□□□ 0.82
CPSF4O95639 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.19■□□□□ 0.82
CPSF4O95639 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPSF4O95639 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.19■□□□□ 0.82
CPSF4O95639 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.19■□□□□ 0.82
CPSF4O95639 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.19■□□□□ 0.82
CPSF4O95639 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CPSF4O95639 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPSF4O95639 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CPSF4O95639 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.19■□□□□ 0.82
CPSF4O95639 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.19■□□□□ 0.82
CPSF4O95639 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CPSF4O95639 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CPSF4O95639 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CPSF4O95639 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CPSF4O95639 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CPSF4O95639 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CPSF4O95639 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CPSF4O95639 AC011298.3-201ENST00000615796 283 ntBASIC20.18■□□□□ 0.82
CPSF4O95639 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CPSF4O95639 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CPSF4O95639 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CPSF4O95639 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CPSF4O95639 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CPSF4O95639 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CPSF4O95639 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.17■□□□□ 0.82
CPSF4O95639 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CPSF4O95639 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CPSF4O95639 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CPSF4O95639 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CPSF4O95639 AL024507.2-201ENST00000606070 2574 ntBASIC20.17■□□□□ 0.82
CPSF4O95639 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
CPSF4O95639 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CPSF4O95639 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CPSF4O95639 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CPSF4O95639 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.17■□□□□ 0.82
CPSF4O95639 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CPSF4O95639 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CPSF4O95639 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.17■□□□□ 0.82
CPSF4O95639 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CPSF4O95639 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.17■□□□□ 0.82
CPSF4O95639 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CPSF4O95639 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CPSF4O95639 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CPSF4O95639 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CPSF4O95639 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.17■□□□□ 0.82
CPSF4O95639 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CPSF4O95639 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.16■□□□□ 0.82
CPSF4O95639 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CPSF4O95639 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CPSF4O95639 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CPSF4O95639 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.16■□□□□ 0.82
CPSF4O95639 AP005435.1-201ENST00000529293 1178 ntBASIC20.16■□□□□ 0.82
CPSF4O95639 AL034346.1-201ENST00000568244 1277 ntBASIC20.16■□□□□ 0.82
CPSF4O95639 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.16■□□□□ 0.82
CPSF4O95639 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CPSF4O95639 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.16■□□□□ 0.82
CPSF4O95639 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms