Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRIM49D1C9J1S8 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
TRIM49D1C9J1S8 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRIM49D1C9J1S8 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.29■■□□□ 1
TRIM49D1C9J1S8 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.29■■□□□ 1
TRIM49D1C9J1S8 AL356740.2-201ENST00000601559 647 ntBASIC21.29■■□□□ 1
TRIM49D1C9J1S8 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.29■■□□□ 1
TRIM49D1C9J1S8 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.29■■□□□ 1
TRIM49D1C9J1S8 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRIM49D1C9J1S8 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 LINC01521-201ENST00000504184 1943 ntBASIC21.28■■□□□ 1
TRIM49D1C9J1S8 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.28■■□□□ 1
TRIM49D1C9J1S8 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 OXCT2P1-201ENST00000447263 1535 ntBASIC21.28■■□□□ 1
TRIM49D1C9J1S8 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.28■■□□□ 1
TRIM49D1C9J1S8 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM49D1C9J1S8 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.27■■□□□ 1
TRIM49D1C9J1S8 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
TRIM49D1C9J1S8 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
TRIM49D1C9J1S8 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.27■■□□□ 1
TRIM49D1C9J1S8 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM49D1C9J1S8 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
TRIM49D1C9J1S8 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRIM49D1C9J1S8 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM49D1C9J1S8 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM49D1C9J1S8 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
TRIM49D1C9J1S8 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM49D1C9J1S8 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM49D1C9J1S8 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRIM49D1C9J1S8 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
TRIM49D1C9J1S8 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM49D1C9J1S8 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM49D1C9J1S8 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
TRIM49D1C9J1S8 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM49D1C9J1S8 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM49D1C9J1S8 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.26■□□□□ 0.99
TRIM49D1C9J1S8 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM49D1C9J1S8 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.26■□□□□ 0.99
TRIM49D1C9J1S8 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.26■□□□□ 0.99
TRIM49D1C9J1S8 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.26■□□□□ 0.99
TRIM49D1C9J1S8 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM49D1C9J1S8 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM49D1C9J1S8 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM49D1C9J1S8 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM49D1C9J1S8 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM49D1C9J1S8 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM49D1C9J1S8 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM49D1C9J1S8 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM49D1C9J1S8 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM49D1C9J1S8 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM49D1C9J1S8 MIR3621-201ENST00000580529 85 ntBASIC21.25■□□□□ 0.99
TRIM49D1C9J1S8 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM49D1C9J1S8 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.25■□□□□ 0.99
TRIM49D1C9J1S8 AC003102.1-202ENST00000563394 1796 ntBASIC21.25■□□□□ 0.99
TRIM49D1C9J1S8 AL049796.1-201ENST00000565336 1766 ntBASIC21.25■□□□□ 0.99
TRIM49D1C9J1S8 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM49D1C9J1S8 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
TRIM49D1C9J1S8 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM49D1C9J1S8 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM49D1C9J1S8 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM49D1C9J1S8 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM49D1C9J1S8 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM49D1C9J1S8 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM49D1C9J1S8 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
TRIM49D1C9J1S8 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
TRIM49D1C9J1S8 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM49D1C9J1S8 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.24■□□□□ 0.99
TRIM49D1C9J1S8 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM49D1C9J1S8 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM49D1C9J1S8 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.24■□□□□ 0.99
TRIM49D1C9J1S8 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
TRIM49D1C9J1S8 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM49D1C9J1S8 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.24■□□□□ 0.99
TRIM49D1C9J1S8 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 SRD5A1P1-201ENST00000442297 786 ntBASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.23■□□□□ 0.99
TRIM49D1C9J1S8 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms