Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 SUN1-207ENST00000419312 473 ntTSL 417.48■□□□□ 0.391e-6■■■■□ 25.8
SF3B1O75533 SUN1-201ENST00000340926 2128 ntTSL 514.52□□□□□ -0.081e-6■■■■□ 25.8
SF3B1O75533 SUN1-234ENST00000493681 526 ntTSL 313.58□□□□□ -0.241e-6■■■■□ 25.8
SF3B1O75533 SUN1-228ENST00000471349 569 ntTSL 43.16□□□□□ -1.91e-6■■■■□ 25.8
SF3B1O75533 SUGP2-209ENST00000597280 814 ntTSL 315.35■□□□□ 0.051e-7■■■■□ 25.8
SF3B1O75533 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.11e-7■■■■□ 25.8
SF3B1O75533 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.121e-7■■■■□ 25.8
SF3B1O75533 SUGP2-213ENST00000600239 5565 ntTSL 213.99□□□□□ -0.171e-7■■■■□ 25.8
SF3B1O75533 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.53■□□□□ 0.569e-7■■■■□ 25.7
SF3B1O75533 ATF7IP2-205ENST00000535850 1907 ntTSL 211.08□□□□□ -0.643e-6■■■■□ 25.6
SF3B1O75533 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC7.07□□□□□ -1.283e-6■■■■□ 25.6
SF3B1O75533 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.313e-6■■■■□ 25.6
SF3B1O75533 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.23□□□□□ -1.893e-6■■■■□ 25.6
SF3B1O75533 MAP3K7-204ENST00000369329 4911 ntAPPRIS P4 TSL 1 (best) BASIC11.29□□□□□ -0.68e-6■■■■□ 25.6
SF3B1O75533 MAP3K7-205ENST00000369332 4830 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.68e-6■■■■□ 25.6
SF3B1O75533 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.82□□□□□ -1.488e-6■■■■□ 25.6
SF3B1O75533 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4□□□□□ -1.778e-6■■■■□ 25.6
SF3B1O75533 CNOT2-235ENST00000552151 1682 ntTSL 22.81□□□□□ -1.964e-6■■■■□ 25.6
SF3B1O75533 PILRB-204ENST00000438028 1822 ntTSL 1 (best)20.86■□□□□ 0.932e-10■■■■□ 25.6
SF3B1O75533 PILRB-206ENST00000443526 1364 ntTSL 1 (best)19.92■□□□□ 0.782e-10■■■■□ 25.6
SF3B1O75533 PVRIG2P-201ENST00000435460 978 ntBASIC19.85■□□□□ 0.772e-10■■■■□ 25.6
SF3B1O75533 PILRB-202ENST00000422808 1599 ntTSL 1 (best)19.58■□□□□ 0.732e-10■■■■□ 25.6
SF3B1O75533 PILRB-201ENST00000419749 1506 ntTSL 1 (best)18.9■□□□□ 0.622e-10■■■■□ 25.6
SF3B1O75533 PILRB-210ENST00000457519 2074 ntTSL 1 (best)18.45■□□□□ 0.542e-10■■■■□ 25.6
SF3B1O75533 PILRB-211ENST00000493091 4345 ntTSL 213.45□□□□□ -0.262e-10■■■■□ 25.6
SF3B1O75533 DDIT4-202ENST00000471240 521 ntTSL 223.46■■□□□ 1.353e-9■■■■□ 25.5
SF3B1O75533 DDIT4-203ENST00000473155 753 ntTSL 1 (best)22.86■■□□□ 1.253e-9■■■■□ 25.5
SF3B1O75533 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.245e-6■■■■□ 25.5
SF3B1O75533 EPRS-206ENST00000609181 2968 ntTSL 1 (best)10.85□□□□□ -0.675e-6■■■■□ 25.5
SF3B1O75533 RPL11-204ENST00000467075 377 ntTSL 313.93□□□□□ -0.182e-6■■■■□ 25.5
SF3B1O75533 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.173e-6■■■■□ 25.5
SF3B1O75533 MLEC-203ENST00000535413 617 ntTSL 211.07□□□□□ -0.643e-6■■■■□ 25.5
SF3B1O75533 KMT2C-206ENST00000424877 5874 ntTSL 56.06□□□□□ -1.445e-6■■■■□ 25.4
SF3B1O75533 KMT2C-203ENST00000360104 11186 ntTSL 1 (best)5.53□□□□□ -1.525e-6■■■■□ 25.4
SF3B1O75533 PCBP2-225ENST00000553064 1786 ntTSL 514.34□□□□□ -0.111e-6■■■■□ 25.4
SF3B1O75533 PCBP2-211ENST00000547987 681 ntTSL 39.44□□□□□ -0.91e-6■■■■□ 25.4
SF3B1O75533 PCBP2-218ENST00000550585 2543 ntTSL 59.39□□□□□ -0.911e-6■■■■□ 25.4
SF3B1O75533 NUP214-215ENST00000525980 2274 ntTSL 29.18□□□□□ -0.946e-7■■■■□ 25.3
SF3B1O75533 FAM222B-203ENST00000577376 720 ntTSL 227.46■■□□□ 1.993e-6■■■■□ 25.3
SF3B1O75533 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC26.65■■□□□ 1.863e-6■■■■□ 25.3
SF3B1O75533 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC24.07■■□□□ 1.443e-6■■■■□ 25.3
SF3B1O75533 FAM222B-206ENST00000579381 462 ntTSL 524.01■■□□□ 1.433e-6■■■■□ 25.3
SF3B1O75533 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC24.01■■□□□ 1.433e-6■■■■□ 25.3
SF3B1O75533 FAM222B-207ENST00000581229 598 ntTSL 422.63■■□□□ 1.213e-6■■■■□ 25.3
SF3B1O75533 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.18■□□□□ 0.343e-6■■■■□ 25.3
SF3B1O75533 FAM222B-212ENST00000583307 886 ntTSL 211.67□□□□□ -0.543e-6■■■■□ 25.3
SF3B1O75533 FAM222B-204ENST00000577513 731 ntTSL 310.62□□□□□ -0.713e-6■■■■□ 25.3
SF3B1O75533 FAM222B-214ENST00000583953 564 ntTSL 4 BASIC9.76□□□□□ -0.853e-6■■■■□ 25.3
SF3B1O75533 CHPT1-209ENST00000552329 580 ntTSL 45.49□□□□□ -1.539e-8■■■■□ 25.3
SF3B1O75533 DGCR8-204ENST00000457069 770 ntTSL 319.45■□□□□ 0.74e-7■■■■□ 25.3
SF3B1O75533 SRRM2-226ENST00000576415 461 ntTSL 228.09■■■□□ 2.096e-8■■■■□ 25.3
SF3B1O75533 SRRM2-223ENST00000575701 860 ntTSL 327.62■■■□□ 2.016e-8■■■■□ 25.3
SF3B1O75533 EIF3B-203ENST00000413917 962 ntTSL 222.06■■□□□ 1.125e-11■■■■□ 25.3
SF3B1O75533 NAMPT-205ENST00000424768 1147 ntTSL 413.09□□□□□ -0.312e-6■■■■□ 25.2
SF3B1O75533 NAMPT-203ENST00000393618 592 ntTSL 412.68□□□□□ -0.382e-6■■■■□ 25.2
SF3B1O75533 NAMPT-201ENST00000222553 4582 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.492e-6■■■■□ 25.2
SF3B1O75533 NAMPT-206ENST00000441045 589 ntTSL 411.5□□□□□ -0.572e-6■■■■□ 25.2
SF3B1O75533 NAMPT-204ENST00000417537 300 ntTSL 49.52□□□□□ -0.892e-6■■■■□ 25.2
SF3B1O75533 NAMPT-213ENST00000491027 1009 ntTSL 29.31□□□□□ -0.922e-6■■■■□ 25.2
SF3B1O75533 NAMPT-212ENST00000489732 1976 ntTSL 27.9□□□□□ -1.142e-6■■■■□ 25.2
SF3B1O75533 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.57□□□□□ -1.682e-6■■■■□ 25.2
SF3B1O75533 NAMPT-211ENST00000489358 581 ntTSL 34.4□□□□□ -1.712e-6■■■■□ 25.2
SF3B1O75533 NAMPT-210ENST00000486949 1115 ntTSL 22.37□□□□□ -2.032e-6■■■■□ 25.2
SF3B1O75533 NUP214-212ENST00000524578 524 ntTSL 31.69□□□□□ -2.143e-7■■■■□ 25.2
SF3B1O75533 KMT2E-206ENST00000474203 617 ntTSL 310.1□□□□□ -0.795e-7■■■■□ 25.1
SF3B1O75533 DAZAP1-203ENST00000585485 3943 ntTSL 212.8□□□□□ -0.369e-7■■■■□ 25.1
SF3B1O75533 MARS-202ENST00000447721 1328 ntTSL 220.61■□□□□ 0.892e-6■■■■□ 25.1
SF3B1O75533 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.87■□□□□ 0.132e-6■■■■□ 25.1
SF3B1O75533 MARS-204ENST00000545888 2979 ntTSL 515.21■□□□□ 0.022e-6■■■■□ 25.1
SF3B1O75533 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.032e-6■■■■□ 25.1
SF3B1O75533 MARS-203ENST00000537638 3592 ntTSL 213.86□□□□□ -0.192e-6■■■■□ 25.1
SF3B1O75533 NEU1-208ENST00000491768 1875 ntTSL 520.16■□□□□ 0.823e-7■■■■□ 25.1
SF3B1O75533 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.543e-7■■■■□ 25.1
SF3B1O75533 NEU1-207ENST00000480384 2214 ntTSL 218.28■□□□□ 0.523e-7■■■■□ 25.1
SF3B1O75533 NEU1-209ENST00000495807 4616 ntTSL 213.03□□□□□ -0.323e-7■■■■□ 25.1
SF3B1O75533 UBA5-214ENST00000505777 576 ntTSL 423.19■■□□□ 1.32e-6■■■■□ 25.1
SF3B1O75533 UBA5-203ENST00000464068 657 ntTSL 520.28■□□□□ 0.842e-6■■■■□ 25.1
SF3B1O75533 UBA5-205ENST00000468022 662 ntTSL 516.69■□□□□ 0.262e-6■■■■□ 25.1
SF3B1O75533 PAPOLA-205ENST00000553689 2267 ntTSL 1 (best)19.85■□□□□ 0.773e-6■■■■□ 25.1
SF3B1O75533 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.083e-6■■■■□ 25.1
SF3B1O75533 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.77□□□□□ -1.653e-6■■■■□ 25.1
SF3B1O75533 PAPOLA-215ENST00000555626 2272 ntTSL 1 (best)3.8□□□□□ -1.83e-6■■■■□ 25.1
SF3B1O75533 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC24.61■■□□□ 1.537e-7■■■■□ 25.1
SF3B1O75533 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.477e-7■■■■□ 25.1
SF3B1O75533 MOV10-214ENST00000490413 1370 ntTSL 216.3■□□□□ 0.22e-8■■■■□ 25.1
SF3B1O75533 DCAF7-202ENST00000431926 1354 ntTSL 1 (best)16.06■□□□□ 0.162e-8■■■■□ 25.1
SF3B1O75533 MOV10-207ENST00000471160 493 ntTSL 312.71□□□□□ -0.372e-8■■■■□ 25.1
SF3B1O75533 EIF2D-207ENST00000474408 484 ntTSL 311.79□□□□□ -0.522e-8■■■■□ 25.1
SF3B1O75533 MOV10-213ENST00000488160 896 ntTSL 211.25□□□□□ -0.612e-8■■■■□ 25.1
SF3B1O75533 DCAF7-203ENST00000580091 325 ntTSL 310.96□□□□□ -0.652e-8■■■■□ 25.1
SF3B1O75533 MOV10-211ENST00000482545 380 ntTSL 510.79□□□□□ -0.682e-8■■■■□ 25.1
SF3B1O75533 DCAF7-205ENST00000614556 6340 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.692e-8■■■■□ 25.1
SF3B1O75533 KNTC1-203ENST00000423927 1250 ntTSL 49.13□□□□□ -0.952e-8■■■■□ 25.1
SF3B1O75533 KNTC1-214ENST00000545065 782 ntTSL 58.84□□□□□ -0.992e-8■■■■□ 25.1
SF3B1O75533 MOV10-210ENST00000481711 379 ntTSL 36.88□□□□□ -1.312e-8■■■■□ 25.1
SF3B1O75533 KNTC1-207ENST00000535186 553 ntTSL 42.95□□□□□ -1.942e-8■■■■□ 25.1
SF3B1O75533 CMAS-204ENST00000537658 590 ntTSL 32.51□□□□□ -2.012e-8■■■■□ 25.1
SF3B1O75533 RB1CC1-206ENST00000518710 711 ntTSL 327.78■■■□□ 2.041e-6■■■■□ 25
SF3B1O75533 RB1CC1-204ENST00000518211 891 ntTSL 519.98■□□□□ 0.791e-6■■■■□ 25
SF3B1O75533 RB1CC1-203ENST00000517963 551 ntTSL 419.68■□□□□ 0.741e-6■■■■□ 25
Retrieved 100 of 46,956 protein–RNA pairs in 2465.5 ms