Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
UBE2D4Q9Y2X8 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
UBE2D4Q9Y2X8 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
UBE2D4Q9Y2X8 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
UBE2D4Q9Y2X8 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
UBE2D4Q9Y2X8 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
UBE2D4Q9Y2X8 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
UBE2D4Q9Y2X8 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC14.83□□□□□ -0.04
UBE2D4Q9Y2X8 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 AC133637.1-201ENST00000624115 1537 ntBASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 DYM-203ENST00000442713 2147 ntTSL 2 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 AC241377.3-202ENST00000626088 1088 ntBASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 AC241585.3-202ENST00000628937 1088 ntBASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 AC245100.8-202ENST00000629247 1058 ntBASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 GTSE1-AS1-202ENST00000623117 1518 ntBASIC14.82□□□□□ -0.04
UBE2D4Q9Y2X8 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 AL451085.2-201ENST00000605085 799 ntBASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
UBE2D4Q9Y2X8 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 MIR4787-201ENST00000607364 84 ntBASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 AL117332.1-201ENST00000622628 974 ntBASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 AC068587.7-201ENST00000641602 218 ntBASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
UBE2D4Q9Y2X8 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 LINC01006-201ENST00000333319 2292 ntBASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 AL049796.1-201ENST00000565336 1766 ntBASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
UBE2D4Q9Y2X8 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
UBE2D4Q9Y2X8 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms