Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.46■□□□□ 0.87
VPS29Q9UBQ0 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS29Q9UBQ0 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS29Q9UBQ0 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS29Q9UBQ0 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
VPS29Q9UBQ0 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
VPS29Q9UBQ0 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.45■□□□□ 0.86
VPS29Q9UBQ0 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.45■□□□□ 0.86
VPS29Q9UBQ0 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
VPS29Q9UBQ0 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.45■□□□□ 0.86
VPS29Q9UBQ0 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.45■□□□□ 0.86
VPS29Q9UBQ0 SMUG1P1-201ENST00000590640 811 ntBASIC20.45■□□□□ 0.86
VPS29Q9UBQ0 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.45■□□□□ 0.86
VPS29Q9UBQ0 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS29Q9UBQ0 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS29Q9UBQ0 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS29Q9UBQ0 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.45■□□□□ 0.86
VPS29Q9UBQ0 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.44■□□□□ 0.86
VPS29Q9UBQ0 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
VPS29Q9UBQ0 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS29Q9UBQ0 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS29Q9UBQ0 EDA-201ENST00000338901 1233 ntBASIC20.43■□□□□ 0.86
VPS29Q9UBQ0 AC099791.1-201ENST00000416440 715 ntBASIC20.43■□□□□ 0.86
VPS29Q9UBQ0 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.43■□□□□ 0.86
VPS29Q9UBQ0 AC027682.1-201ENST00000562846 899 ntBASIC20.43■□□□□ 0.86
VPS29Q9UBQ0 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS29Q9UBQ0 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS29Q9UBQ0 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.43■□□□□ 0.86
VPS29Q9UBQ0 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS29Q9UBQ0 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS29Q9UBQ0 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.43■□□□□ 0.86
VPS29Q9UBQ0 AC003102.1-202ENST00000563394 1796 ntBASIC20.43■□□□□ 0.86
VPS29Q9UBQ0 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS29Q9UBQ0 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS29Q9UBQ0 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS29Q9UBQ0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS29Q9UBQ0 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS29Q9UBQ0 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS29Q9UBQ0 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS29Q9UBQ0 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS29Q9UBQ0 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.42■□□□□ 0.86
VPS29Q9UBQ0 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS29Q9UBQ0 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
VPS29Q9UBQ0 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS29Q9UBQ0 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS29Q9UBQ0 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS29Q9UBQ0 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS29Q9UBQ0 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 AP006587.3-201ENST00000525742 1516 ntBASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
VPS29Q9UBQ0 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS29Q9UBQ0 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS29Q9UBQ0 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS29Q9UBQ0 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS29Q9UBQ0 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS29Q9UBQ0 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.4■□□□□ 0.86
VPS29Q9UBQ0 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
VPS29Q9UBQ0 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
VPS29Q9UBQ0 AC110285.6-201ENST00000617652 491 ntBASIC20.4■□□□□ 0.86
VPS29Q9UBQ0 AL355001.2-201ENST00000620617 1191 ntBASIC20.4■□□□□ 0.86
VPS29Q9UBQ0 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS29Q9UBQ0 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS29Q9UBQ0 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS29Q9UBQ0 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS29Q9UBQ0 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.39■□□□□ 0.85
VPS29Q9UBQ0 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS29Q9UBQ0 AP001330.3-201ENST00000520123 633 ntBASIC20.39■□□□□ 0.85
VPS29Q9UBQ0 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.39■□□□□ 0.85
VPS29Q9UBQ0 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
VPS29Q9UBQ0 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS29Q9UBQ0 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS29Q9UBQ0 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms