Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDH9Q9HC56 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDH9Q9HC56 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDH9Q9HC56 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC22.04■■□□□ 1.12
PCDH9Q9HC56 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDH9Q9HC56 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDH9Q9HC56 RASA4CP-201ENST00000424092 1398 ntBASIC22.03■■□□□ 1.12
PCDH9Q9HC56 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDH9Q9HC56 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
PCDH9Q9HC56 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDH9Q9HC56 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDH9Q9HC56 AC091305.1-201ENST00000479476 895 ntBASIC22.03■■□□□ 1.12
PCDH9Q9HC56 AC142381.2-201ENST00000566120 298 ntBASIC22.03■■□□□ 1.12
PCDH9Q9HC56 AC104564.3-201ENST00000582367 638 ntBASIC22.03■■□□□ 1.12
PCDH9Q9HC56 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
PCDH9Q9HC56 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDH9Q9HC56 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDH9Q9HC56 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDH9Q9HC56 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
PCDH9Q9HC56 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDH9Q9HC56 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDH9Q9HC56 FEM1AP4-201ENST00000443167 1987 ntBASIC22.02■■□□□ 1.12
PCDH9Q9HC56 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDH9Q9HC56 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDH9Q9HC56 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDH9Q9HC56 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
PCDH9Q9HC56 MPST-208ENST00000628507 698 ntTSL 5 BASIC22.02■■□□□ 1.12
PCDH9Q9HC56 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDH9Q9HC56 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
PCDH9Q9HC56 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDH9Q9HC56 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC22.02■■□□□ 1.12
PCDH9Q9HC56 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDH9Q9HC56 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
PCDH9Q9HC56 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC22.02■■□□□ 1.11
PCDH9Q9HC56 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PCDH9Q9HC56 PKD1P6-201ENST00000343738 4769 ntBASIC22.01■■□□□ 1.11
PCDH9Q9HC56 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PCDH9Q9HC56 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC22.01■■□□□ 1.11
PCDH9Q9HC56 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDH9Q9HC56 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC22.01■■□□□ 1.11
PCDH9Q9HC56 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDH9Q9HC56 AL024507.2-201ENST00000606070 2574 ntBASIC22.01■■□□□ 1.11
PCDH9Q9HC56 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDH9Q9HC56 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
PCDH9Q9HC56 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC22.01■■□□□ 1.11
PCDH9Q9HC56 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC22.01■■□□□ 1.11
PCDH9Q9HC56 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PCDH9Q9HC56 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC22■■□□□ 1.11
PCDH9Q9HC56 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC22■■□□□ 1.11
PCDH9Q9HC56 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC22■■□□□ 1.11
PCDH9Q9HC56 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC22■■□□□ 1.11
PCDH9Q9HC56 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PCDH9Q9HC56 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC22■■□□□ 1.11
PCDH9Q9HC56 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC22■■□□□ 1.11
PCDH9Q9HC56 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC22■■□□□ 1.11
PCDH9Q9HC56 GRAMD4P2-201ENST00000423297 1097 ntBASIC22■■□□□ 1.11
PCDH9Q9HC56 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC22■■□□□ 1.11
PCDH9Q9HC56 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC22■■□□□ 1.11
PCDH9Q9HC56 OXCT2P1-201ENST00000447263 1535 ntBASIC22■■□□□ 1.11
PCDH9Q9HC56 MFF-203ENST00000349901 1716 ntTSL 2 BASIC22■■□□□ 1.11
PCDH9Q9HC56 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC22■■□□□ 1.11
PCDH9Q9HC56 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PCDH9Q9HC56 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.99■■□□□ 1.11
PCDH9Q9HC56 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PCDH9Q9HC56 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
PCDH9Q9HC56 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.99■■□□□ 1.11
PCDH9Q9HC56 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PCDH9Q9HC56 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
PCDH9Q9HC56 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
PCDH9Q9HC56 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PCDH9Q9HC56 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.99■■□□□ 1.11
PCDH9Q9HC56 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
PCDH9Q9HC56 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.98■■□□□ 1.11
PCDH9Q9HC56 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDH9Q9HC56 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDH9Q9HC56 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDH9Q9HC56 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.98■■□□□ 1.11
PCDH9Q9HC56 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.98■■□□□ 1.11
PCDH9Q9HC56 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.98■■□□□ 1.11
PCDH9Q9HC56 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PCDH9Q9HC56 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDH9Q9HC56 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.98■■□□□ 1.11
PCDH9Q9HC56 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.98■■□□□ 1.11
PCDH9Q9HC56 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
PCDH9Q9HC56 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDH9Q9HC56 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDH9Q9HC56 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDH9Q9HC56 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDH9Q9HC56 IGHV3-19-201ENST00000521488 291 ntBASIC21.97■■□□□ 1.11
PCDH9Q9HC56 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PCDH9Q9HC56 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.97■■□□□ 1.11
PCDH9Q9HC56 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.97■■□□□ 1.11
PCDH9Q9HC56 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
PCDH9Q9HC56 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDH9Q9HC56 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
PCDH9Q9HC56 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PCDH9Q9HC56 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
PCDH9Q9HC56 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PCDH9Q9HC56 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.97■■□□□ 1.11
PCDH9Q9HC56 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms