Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPNE4Q96A23 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.14■□□□□ 0.65
CPNE4Q96A23 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.14■□□□□ 0.65
CPNE4Q96A23 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPNE4Q96A23 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
CPNE4Q96A23 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPNE4Q96A23 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.14■□□□□ 0.65
CPNE4Q96A23 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPNE4Q96A23 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CPNE4Q96A23 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CPNE4Q96A23 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE4Q96A23 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE4Q96A23 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE4Q96A23 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE4Q96A23 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.13■□□□□ 0.65
CPNE4Q96A23 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.13■□□□□ 0.65
CPNE4Q96A23 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.13■□□□□ 0.65
CPNE4Q96A23 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE4Q96A23 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CPNE4Q96A23 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.13■□□□□ 0.65
CPNE4Q96A23 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.13■□□□□ 0.65
CPNE4Q96A23 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE4Q96A23 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE4Q96A23 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.13■□□□□ 0.65
CPNE4Q96A23 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE4Q96A23 ECEL1P1-201ENST00000373592 1742 ntBASIC19.13■□□□□ 0.65
CPNE4Q96A23 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE4Q96A23 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE4Q96A23 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CPNE4Q96A23 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPNE4Q96A23 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPNE4Q96A23 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.12■□□□□ 0.65
CPNE4Q96A23 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.12■□□□□ 0.65
CPNE4Q96A23 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
CPNE4Q96A23 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.12■□□□□ 0.65
CPNE4Q96A23 AL162430.1-201ENST00000480705 870 ntBASIC19.12■□□□□ 0.65
CPNE4Q96A23 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.12■□□□□ 0.65
CPNE4Q96A23 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CPNE4Q96A23 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.12■□□□□ 0.65
CPNE4Q96A23 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CPNE4Q96A23 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPNE4Q96A23 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.12■□□□□ 0.65
CPNE4Q96A23 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.12■□□□□ 0.65
CPNE4Q96A23 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CPNE4Q96A23 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPNE4Q96A23 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.11■□□□□ 0.65
CPNE4Q96A23 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.11■□□□□ 0.65
CPNE4Q96A23 KRT87P-202ENST00000534226 1464 ntBASIC19.11■□□□□ 0.65
CPNE4Q96A23 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CPNE4Q96A23 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.11■□□□□ 0.65
CPNE4Q96A23 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CPNE4Q96A23 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPNE4Q96A23 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.11■□□□□ 0.65
CPNE4Q96A23 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPNE4Q96A23 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPNE4Q96A23 AL117328.2-201ENST00000624617 1940 ntBASIC19.11■□□□□ 0.65
CPNE4Q96A23 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.11■□□□□ 0.65
CPNE4Q96A23 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPNE4Q96A23 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPNE4Q96A23 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPNE4Q96A23 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CPNE4Q96A23 PKD1P6-201ENST00000343738 4769 ntBASIC19.1■□□□□ 0.65
CPNE4Q96A23 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CPNE4Q96A23 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CPNE4Q96A23 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
CPNE4Q96A23 NTF6G-201ENST00000591094 616 ntBASIC19.1■□□□□ 0.65
CPNE4Q96A23 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CPNE4Q96A23 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.1■□□□□ 0.65
CPNE4Q96A23 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CPNE4Q96A23 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPNE4Q96A23 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPNE4Q96A23 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CPNE4Q96A23 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPNE4Q96A23 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CPNE4Q96A23 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPNE4Q96A23 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CPNE4Q96A23 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.09■□□□□ 0.65
CPNE4Q96A23 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPNE4Q96A23 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CPNE4Q96A23 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.09■□□□□ 0.65
CPNE4Q96A23 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPNE4Q96A23 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPNE4Q96A23 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CPNE4Q96A23 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPNE4Q96A23 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPNE4Q96A23 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.09■□□□□ 0.65
CPNE4Q96A23 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.09■□□□□ 0.65
CPNE4Q96A23 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.09■□□□□ 0.65
CPNE4Q96A23 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.09■□□□□ 0.65
CPNE4Q96A23 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.09■□□□□ 0.65
CPNE4Q96A23 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CPNE4Q96A23 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CPNE4Q96A23 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPNE4Q96A23 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPNE4Q96A23 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPNE4Q96A23 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.09■□□□□ 0.65
CPNE4Q96A23 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPNE4Q96A23 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CPNE4Q96A23 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
CPNE4Q96A23 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms