Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
NKX2-3Q8TAU0 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
NKX2-3Q8TAU0 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.41■■□□□ 1.66
NKX2-3Q8TAU0 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
NKX2-3Q8TAU0 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
NKX2-3Q8TAU0 AP004607.7-201ENST00000527152 1677 ntBASIC25.41■■□□□ 1.66
NKX2-3Q8TAU0 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
NKX2-3Q8TAU0 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
NKX2-3Q8TAU0 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
NKX2-3Q8TAU0 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 CD99P1-205ENST00000527459 561 ntBASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
NKX2-3Q8TAU0 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
NKX2-3Q8TAU0 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC25.39■■□□□ 1.66
NKX2-3Q8TAU0 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
NKX2-3Q8TAU0 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC25.39■■□□□ 1.66
NKX2-3Q8TAU0 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
NKX2-3Q8TAU0 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC25.39■■□□□ 1.66
NKX2-3Q8TAU0 HSCB-202ENST00000398941 955 ntTSL 2 BASIC25.39■■□□□ 1.66
NKX2-3Q8TAU0 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC25.39■■□□□ 1.66
NKX2-3Q8TAU0 BID-214ENST00000617586 542 ntTSL 5 BASIC25.39■■□□□ 1.66
NKX2-3Q8TAU0 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC25.39■■□□□ 1.66
NKX2-3Q8TAU0 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC25.39■■□□□ 1.66
NKX2-3Q8TAU0 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
NKX2-3Q8TAU0 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC25.39■■□□□ 1.65
NKX2-3Q8TAU0 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC25.38■■□□□ 1.65
NKX2-3Q8TAU0 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
NKX2-3Q8TAU0 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
NKX2-3Q8TAU0 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC25.38■■□□□ 1.65
NKX2-3Q8TAU0 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC25.38■■□□□ 1.65
NKX2-3Q8TAU0 GALNS-213ENST00000569433 723 ntTSL 3 BASIC25.38■■□□□ 1.65
NKX2-3Q8TAU0 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
NKX2-3Q8TAU0 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC25.38■■□□□ 1.65
NKX2-3Q8TAU0 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
NKX2-3Q8TAU0 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
NKX2-3Q8TAU0 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
NKX2-3Q8TAU0 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
NKX2-3Q8TAU0 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
NKX2-3Q8TAU0 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
NKX2-3Q8TAU0 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC25.37■■□□□ 1.65
NKX2-3Q8TAU0 AC055733.4-201ENST00000638462 1354 ntBASIC25.37■■□□□ 1.65
NKX2-3Q8TAU0 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
NKX2-3Q8TAU0 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
NKX2-3Q8TAU0 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC25.37■■□□□ 1.65
NKX2-3Q8TAU0 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC25.37■■□□□ 1.65
NKX2-3Q8TAU0 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
NKX2-3Q8TAU0 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
NKX2-3Q8TAU0 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
NKX2-3Q8TAU0 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC25.37■■□□□ 1.65
NKX2-3Q8TAU0 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
NKX2-3Q8TAU0 AC005224.4-201ENST00000583262 1652 ntBASIC25.36■■□□□ 1.65
NKX2-3Q8TAU0 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
NKX2-3Q8TAU0 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC25.36■■□□□ 1.65
NKX2-3Q8TAU0 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
NKX2-3Q8TAU0 METTL26-203ENST00000397664 604 ntTSL 2 BASIC25.36■■□□□ 1.65
NKX2-3Q8TAU0 NCF1B-203ENST00000435988 1254 ntBASIC25.36■■□□□ 1.65
NKX2-3Q8TAU0 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC25.36■■□□□ 1.65
NKX2-3Q8TAU0 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
NKX2-3Q8TAU0 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
NKX2-3Q8TAU0 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
NKX2-3Q8TAU0 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC25.35■■□□□ 1.65
NKX2-3Q8TAU0 AC092053.2-201ENST00000640557 1818 ntBASIC25.35■■□□□ 1.65
NKX2-3Q8TAU0 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
NKX2-3Q8TAU0 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
NKX2-3Q8TAU0 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
NKX2-3Q8TAU0 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
NKX2-3Q8TAU0 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
NKX2-3Q8TAU0 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
NKX2-3Q8TAU0 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC25.35■■□□□ 1.65
NKX2-3Q8TAU0 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC25.35■■□□□ 1.65
NKX2-3Q8TAU0 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC25.34■■□□□ 1.65
NKX2-3Q8TAU0 ME2-206ENST00000638410 2289 ntTSL 5 BASIC25.34■■□□□ 1.65
NKX2-3Q8TAU0 ME2-210ENST00000639255 2262 ntTSL 5 BASIC25.34■■□□□ 1.65
NKX2-3Q8TAU0 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
NKX2-3Q8TAU0 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC25.34■■□□□ 1.65
NKX2-3Q8TAU0 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC25.34■■□□□ 1.65
NKX2-3Q8TAU0 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC25.34■■□□□ 1.65
NKX2-3Q8TAU0 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
NKX2-3Q8TAU0 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC25.34■■□□□ 1.65
NKX2-3Q8TAU0 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC25.34■■□□□ 1.65
NKX2-3Q8TAU0 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms